XLOC_021568 (si:dkey-147f3.8)


Basic Information

Item Value
gene id XLOC_021568
gene name si:dkey-147f3.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16928506 ~ 16945441 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042821
AAACAATGAAACGCAGCTTCAGTGGATCCCCACTGAAAGCACGCACAGGGGGATCGTCTGAGTCAAACGAATGCCTCAGTGGAATGGGGAGCTTCGGTGCGGCTTCGAGGGTCTCCGTAACCAGACCAAACGCAgcaaaggagaaagaaatgattgaggaacaggcagggcagggtcagtcagatgtacagtgtcaggaCTCAGGGGTGCAGTTAGAGATACCTTTAGATGTGGTCGAGGAGATCTTGCTGAACCTGCCCGCTcatcaggtggtgcgagtgtgtCGTCTGGTGTGTCCTGAGTGGAAAGAGCTGGTGGACAGTGCTGCACACTGGAGAGAGCGCTGTCGGAGAGAGGGGATTCAGCCCTGTGATGCTTCCAGACCGCCAGTGGACTGGTGCCAGTTTTACATCCTAAATAAGAATCGACGTAACCTGATCAAGAATCCCAAAGCTGAAGCTGGATTGCAGGGATGGGAGATTGCGGGTAATGGAGATGCCTGCTGGCTGACAGAAGAAAATAGAAAACCATTTCCGGAAAACACAGTCACCAGATGTTTTGTATCATTTAATGGGTTGTGTTTGAAGCGACAGCTGATTGATTTGCAGAAAGAAGGCTACAGTGCTGCTTTCATGGATCAACTGCAACCTGACATTAAAATCTCAGACTGGTATACCACAAACACTCATTACAAAAACCTATATCAAGTCAATATGCAACTGCTTGATGAGGAGATGCAAGCCATTACTAGTTATCATCCGTATAAAATGTTTCTGGAAGGGGACAATTATCCATGGTGTGAGATAACACATGTCTTCCGAAATTATGGACCTGGTGTTCGGTTTATCCGTTTCACTCATGGTGGGTTGGGTAAACAGACCCCGAGGGGCCATAATGGAATAAGACTCACTAACAGCAGCGTGGAGATCTGTCCAGCTGCAGAGAGACGGACTTCAAGGATGGAAGATGGTACATAGTGGAAGCGGCTGCTGGGTGACAGCAGAAAATAGCAAACCTCTTACGGACACAGTCACTAGATGCTTTGTAACGTCTTTTGG
>TCONS_00042822
ATGAAACGCAGCTTCAGTGGATCCCCACTGAAAGCACGCACAGGGGGATCGTCTGAGTCAAACGAATGCCTCAGTGGAATGGGGAGCTTCGGTGCGGCTTCGAGGGTCTCCGTAACCAGACCAAACGCAgaCTCAGGGGTGCAGTTAGAGATACCTTTAGATGTGGTCGAGGAGATCTTGCTGAACCTGCCCGCTcatcaggtggtgcgagtgtgtCGTCTGGTGTGTCCTGAGTGGAAAGAGCTGGTGGACAGTGCTGCACACTGGAGAGAGCGCTGTCGGAGAGAGGGGATTCAGCCCTGTGATGCTTCCAGACCGCCAGTGGACTGGTGCCAGTTTTACATCCTAAATAAGAATCGACGTAACCTGATCAAGAATCCCAAAGCTGAAGCTGGATTGCAGGGATGGGAGATTGCGGGTAATGGAGATGCCTGCTGGCTGACAGAAGAAAATAGAAAACCATTTCCGGAAAACACAGTCACCAGATGTTTTGTATCATTTAATGGGTTGTGTTTGAAGCGACAGCTGATTGATTTGCAGAAAGAAGGCTACAGTGCTGCTTTCATGGATCAACTGCAACCTGACATTAAAATCTCAGACTGGTATACCACAAACACTCATTACAAAAACCTATATCAAGTCAATATGCAACTGCTTGATGAGGAGATGCAAGCCATTACTAGTTATCATCCGTATAAAATGTTTCTGGAAGGGGACAATTATCCATGGTGTGAGATAACACATGTCTTCCGAAATTATGGACCTGGTGTTCGGTTTATCCGTTTCACTCATGGTGGGTTGGGTAAACAGACCCCGAGGGGCCATAATGGAATAAGACTCACTAACAGCAGCGTGGAGATCTGTCCAGCTGCAGAGAGACGGACTTCAAGGATGGAAGATGGTACATAG
>TCONS_00042823
GCTTTCATGGATCAACTGCAACCTGACATTAAAATCTCAGACTGGTATACCACAAACACTCATTACAAAAACCTATATCAAGTCAATATGCAACTGCTTGATGAGGAGATGCAAGCCATTACTAGTTATCATCCGTATAAAATGTTTCTGGAAGGGGACAATTATCCATGGTGTGAGATAACACATGTCTTCCGAAATTATGGACCTGGTGTTCGGTTTATCCGTTTCACTCATGGTGGGTTGGGTAAACAGACCCCGAGGGGCCATAATGGAATAAGACTCACTAACAGCAGCGTGGAGATCTGTCCAGCTGCAGAGAGGTTGAGATGCACGAAATCCAACTTGCTGATTAATCCCAGTGCAAAAGACGGACTTCAAGGATGGAAGATGGTACATAGTGGAAGCGGCTGCTGGGTGACAGCAGAAAATAGCAAACCTCTTACGGACACAGTCACTAGATGCTTTGTAACGTCTTTTGGGTTATGTTTGAAGCGACAGCTGATTGATTTGCAGAAAGAAGGCTACAGTGATACTTTCATGGATCAGGTGCAACCTCATATCAAGATATCAGACTGGTATGCACCTCGTAACGATTGTGGAAGTGAGTATCAGATCTGTGTGGAGTTGCTTGATCAGGAGAAGAAACCCATCAGTACCTTTGAGCCTGAGAAAGTGTTATTTCACTTTGGGAACTCTCAGCCGTGGTGTCAAGTGAGTAGCTTAATACAGAGGGTCCAACAGGCTAAATGCACGggcacttaaaataaaaaaaaaaa
>TCONS_00042824
GTTATGTTTGAAGCGACAGCTGATTGATTTGCAGAAAGAAGGCTACAGTGATACTTTCATGGATCAGGTGCAACCTCATATCAAGATATCAGACTGGTATGCACCTCGTAACGATTGTGGAAGTGAGTATCAGATCTGTGTGGAGTTGCTTGATCAGGAGAAGAAACCCATCAGTACCTTTGAGCCTGAGAAAGTGTTATTTCACTTTGGGAACTCTCAGCCGTGGTGTCAAACGGcacatgtctttaaaaactaTGGAGCTGGAGTTCGATTTATCAGTTTCACTCATGGAGGGAAGGATACACACAACTGGGCAGGTCATTATGGAATCATAGTCACCAACAGTAGTGTGGAGATCTGTCCAGATGATGAAAG

Function

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0006516 glycoprotein catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061009-32 Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; glycoprotein catabolic process; and ubiquitin-dependent ERAD pathway. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000071029

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042821 False 1058 mRNA 0.48 8 16928506 16937530
TCONS_00042822 False 909 mRNA 0.48 7 16928511 16937449
TCONS_00042823 False 776 mRNA 0.43 7 16935494 16938403
TCONS_00042824 True 375 processed_transcript 0.43 3 16937629 16945441

Neighbor

gene id symbol gene type direction distance location
XLOC_021567 si:dkey-147f3.8 coding upstream 10315 16889152 ~ 16918191 (+)
XLOC_021566 zgc:114174 coding upstream 44408 16864130 ~ 16884098 (+)
XLOC_021565 AL732515.2 coding upstream 69473 16858917 ~ 16859033 (+)
XLOC_021564 zgc:173570 coding upstream 74017 16823385 ~ 16854489 (+)
XLOC_021563 zgc:100832 coding upstream 105244 16814968 ~ 16823262 (+)
XLOC_021569 si:dkey-147f3.4 coding downstream 2608 16948049 ~ 16953236 (+)
XLOC_021570 commd7 coding downstream 157519 17102960 ~ 17114092 (+)
XLOC_021571 BX927275.1 coding downstream 200874 17146315 ~ 17211806 (+)
XLOC_021572 nol4lb coding downstream 275545 17220986 ~ 17346255 (+)
XLOC_021573 NA coding downstream 309057 17254498 ~ 17254757 (+)
XLOC_021561 NA non-coding upstream 129784 16798100 ~ 16798722 (+)
XLOC_021556 CU041345.1 non-coding upstream 482466 16444961 ~ 16446040 (+)
XLOC_021554 NA non-coding upstream 521080 16406558 ~ 16407426 (+)
XLOC_021553 AL928725.1 non-coding upstream 571277 16356708 ~ 16357229 (+)
XLOC_021576 NA non-coding downstream 467084 17412525 ~ 17447163 (+)
XLOC_021578 NA non-coding downstream 527678 17473119 ~ 17477448 (+)
XLOC_021579 BX649300.4 non-coding downstream 555873 17501314 ~ 17501428 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_04462781_04463560 NA coding CI01000001 null 4462781 ~ 4464613 (+)