XLOC_021570 (commd7)


Basic Information

Item Value
gene id XLOC_021570
gene name commd7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17102960 ~ 17114092 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042826
CTCTTGATTGAATGAGTGAGCAGCGGAAGTGCGGAAGCAGATGTGACAGTTCACAAGCGGAGCTGCAAATAAACAATGTTGCAGTTGCATTTCACCAATGATGCTTTACCTGACAATGTCAGCACTGACTTTCAAAATCTGAATAAATTCAGTGAACAGCAATTTGTGAGTCTGACAGATATCTTATACCAGTTTCTTCTAGAACCCAAAGAGTCAGAGCGATTTCTGCATCAGCTGACGGAGTTTGCTGGAGAGAATGGGATGAGCGCAGGGCCACTGAGGGCTCTGATGAAGAGCATCCTCCTCCTGCCTCATGGTGCTTTAAAAAGAAACCTAACAGCTGAACAGATCAAACTGGACCTTCTCTCATTAGGATTAAATGAAGACAAGGCCAGTCATTTCTCTGACCAGTGGAGAGTGCACTACCCTGTTTTAGCCAGGCTGGCTGTGGGACAGACACTCATGGTCAACCAGCTTGTTGACATGGAGTGGAAATTTGGTGTTACTGTTGGTACAAGTGAGCAGCAAAAGACTGGAAACATTTTTCTACAGCTGAAACTAGTGATCAGAAAAGGAAACACGACAGAAAATGTATACATGGAGCTCACTTTACCGCAGTTTTATAACTTTCTTCATGAGATGGAGCGAGCCAAAGCCAGTATGGATTGTTTCAGTTAACTGCTTCAGTGGTTTGACTGCCTACTGATAAGTAAACAATTGTAATAATGTTTTCACAAAATGTTTCATGATTTCAACTATTCTCAATCTAATTCCGTAACTTGAATGTTTATGTTCTTGTATGTGAGTTTTTGATTTGATCACTTTCCACTCCTTTAATCATTTTTTGATTACGTGTTTAATAAACTTTTGATGAAA

Function

symbol description
commd7 Predicted to enable NF-kappaB binding activity. Predicted to be involved in negative regulation of NF-kappaB transcription factor activity; negative regulation of transcription, DNA-templated; and tumor necrosis factor-mediated signaling pathway. Orthologous to human COMMD7 (COMM domain containing 7).

GO:

id name namespace
GO:0032088 negative regulation of NF-kappaB transcription factor activity biological_process
GO:0033209 tumor necrosis factor-mediated signaling pathway biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005575 cellular_component cellular_component
GO:0051059 NF-kappaB binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040801-96 Predicted to enable NF-kappaB binding activity. Predicted to be involved in negative regulation of NF-kappaB transcription factor activity; negative regulation of transcription, DNA-templated; and tumor necrosis factor-mediated signaling pathway. Orthologous to human COMMD7 (COMM domain containing 7).

Ensembl:

ensembl_id ENSDARG00000036784

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042826 True 876 mRNA 0.41 9 17102960 17114092

Neighbor

gene id symbol gene type direction distance location
XLOC_021569 si:dkey-147f3.4 coding upstream 149724 16948049 ~ 16953236 (+)
XLOC_021568 si:dkey-147f3.8 coding upstream 157519 16928506 ~ 16945441 (+)
XLOC_021567 si:dkey-147f3.8 coding upstream 184769 16889152 ~ 16918191 (+)
XLOC_021566 zgc:114174 coding upstream 218862 16864130 ~ 16884098 (+)
XLOC_021565 AL732515.2 coding upstream 243927 16858917 ~ 16859033 (+)
XLOC_021571 BX927275.1 coding downstream 32223 17146315 ~ 17211806 (+)
XLOC_021572 nol4lb coding downstream 106894 17220986 ~ 17346255 (+)
XLOC_021573 NA coding downstream 140406 17254498 ~ 17254757 (+)
XLOC_021574 SRMS coding downstream 240062 17354154 ~ 17385249 (+)
XLOC_021575 ptk6b coding downstream 273233 17387325 ~ 17404011 (+)
XLOC_021561 NA non-coding upstream 304238 16798100 ~ 16798722 (+)
XLOC_021556 CU041345.1 non-coding upstream 656920 16444961 ~ 16446040 (+)
XLOC_021554 NA non-coding upstream 695534 16406558 ~ 16407426 (+)
XLOC_021553 AL928725.1 non-coding upstream 745731 16356708 ~ 16357229 (+)
XLOC_021576 NA non-coding downstream 298433 17412525 ~ 17447163 (+)
XLOC_021578 NA non-coding downstream 359027 17473119 ~ 17477448 (+)
XLOC_021579 BX649300.4 non-coding downstream 387222 17501314 ~ 17501428 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_04543164_04553053 COMMD7 coding CI01000001 null 4542618 ~ 4553673 (+)