CI01000001_04543164_04553053 (COMMD7)


Basic Information

Item Value
gene id CI01000001_04543164_04553053
gene name COMMD7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4542618 ~ 4553673 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04543164_04553053.mRNA
GTATAAAAACCATGGTCCCACAAGAGTTGCCCTGTTCAAACAAACTAAGAAACATAGTTTATAGCATTGCATTAGGATTTGCCAGAGTAATATTGATAGCCTACATTTTTTTCATGGGAGATATAAACTGTACAATTGAAAATATAAGCAATATTTTTAGTAAAAACAGGAAAATTTTATTACTTGAGACCTGATGTTTTGGAAAATCGCAATAAATTAATTTACTGAGGTATTTTATGTTGCTGCCCATTTAAGGGTTAATATCATGGCACATATTTTATAAATAAGACGAACTTAATCAGCTACTTTTTGCAAAGAAATTAATATTTACTTATATTGTCCGTTATGATAGTTTAATTAACACACAAAAACATCTAGGCTACATTATCACTGCACTACAAAAAGTTCACGACCATGTGCTCAGGAGAACGCGCAAGTTTGAGAATGGCGAAAGTGCTGCGCTAAATCATTGGCCTGAATGAGCAGCGGAAGTGTGGAAGCAGATGTGACAGTTGAGTGTATCAACAGCGGAGCTGCAAGGAAACAATGTTGCAGTTGCATTTCACGAATGATACATTACCCGACAATGTCAGCACTGACTTTCAGAATCTGAATAAATTCAGTGAACAGCAATTTGTGAGTCTGACAGAGATCTTATACCAGTTCCTTCTAGAACCCAAAGAGTCCGAGCGGTTCTTGCAACAGCTGACGGAGTTTGCTGGAGAGAATGGGATGAGTGCAGGACCACTGAGGGCTCTGATGAAGAGTGTCCTCCTCCTACCTCATGGTGCTTTAAAAAGAAACCTAACAGCTGAACAGGTGAAGGTGGACTTGCTCTCATTAGGTACGATCTTTCCTCACACCCATAATCTGTACATGTTTAACTATATTTCCCAGTTTAACAATGAGCTCTATTGCTTAATCACAGGACTAAATGAAGACAAGGCCAGTCATTTCTCTGACCAGTGGAGAGTTCACTACCCTGTTTTGTCCAGGCTGGCTGTGGGACAGACACTAATGGTCAACCAGCTTATTGACATGGAGTGGAAATTTGGGGAAGGAGCGGAGGGGGCGTCCATGTTTAAGTTAATCAATGGCCTACTGAAAACGGAGCTTTCGCTGGATGACGATCCAGACCTGCAGATACAGAGAGCACATAGGTCTCTAGGCCCGAGACCTCAGAATGATGCCACCTTGAGATTGATCATTGTCAGTTTCCTGCAATACAGTACTAAAGATCTGGTCCTACGTGCAGCATGGGCGAAAGAAATACGATACGAGGGCAGACCAGTTTTCTTTGCACATGACTATCCAGTGGAAATTAATGCAAAGCTCAAGGAATACAAACAAATGCGAATCCATTGGGAGACAGGACCTCAGCTTTATGACAGCGCAGCGGAGGCGGCAAAGGACTTGAACAAGAGGGGGTATGCAGTGGACTTGATGGGGATAGCTGAAGGATTTGAAAGCCGGTGGGAAGAAAGGCTGACGCGACATACCCAATGGCAGAAAATATTCCAGATGAGGTTGGAAAAGATGAAAAATATTTATTTAGGATTTTACTGGCAACAAGTAAAAAGGCAAAAACCCGGAAATGGTACAAGGAAGACCCACCTACAGATAGTAACAGAGCTGAAACTGGTGATCAGAAAAGGAAACACGACAGAAAATGTGTACATGGAGCTGACTCTACCACAGTTTTATAACTTCCTTCATGAGATGGAGCGTGCCAAAGCTAGTATGGATTGTTTCAGTTAACCGAGTCGGGAGTCATTGTAATCAGAGTTTGCCTGTTGACCAGTAAAGAGTTGTAATGATGCTTCCATACTTTCAAAATGTTTCAAAAAGAAACTTAAATAATAATTCACTGATCTTATTCAGTTGTGATTGTTAGTGTCTTTGTTTTTGTGTGGGACAAAGATCACATTCCACATCAATGCTCTTTATTGATGATCTTCTGTTTATTAAACCTTTGATAAATATCTTCTGCCATGGTGTTTATTAGTACCAACATAGTGCTTTTTGTTCTTTATTAAAGGAATATATTCTCAAAAATAAGCTTTTTTTTTAGTGTTGGATTTCATATTTTGTTACCTAAAATTGAACCTTCTGCTTACTGTATAAGTAAAATAATTAATACAGAACACTGCAAACACTAAAATTCATTTATTTTGGGATGAATACAGAACATAATTGTCAGTCAAATGTATGTTTTTGTTTTGTCCTTAATAAAATATTTTAGTAAAATTGAAATATTTTTACTTCTACTACTACTATAGGTGCTGCAGAAATGTATTCATTTTGCTGTCAGCAGACATGCCCTATTTGAAAAGTGTTTGCTTATATCAAAGAATGTCATGTCGAGTCAGATTTATGTA

Function

symbol description
commd7 Predicted to enable NF-kappaB binding activity. Predicted to be involved in negative regulation of NF-kappaB transcription factor activity; negative regulation of transcription, DNA-templated; and tumor necrosis factor-mediated signaling pathway. Orthologous to human COMMD7 (COMM domain containing 7).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04543164_04553053.mRNA True 2378 mRNA 0.38 10 4542618 4553673

Neighbor

gene id symbol gene type direction distance location
CI01000001_04462781_04463560 NA coding upstream 78005 4462781 ~ 4464613 (+)
CI01000001_04433559_04437385 NA coding upstream 105168 4433559 ~ 4437450 (+)
CI01000001_04422037_04431229 NA coding upstream 110486 4422037 ~ 4432602 (+)
CI01000001_04369131_04373697 SNPHB, SNPH coding upstream 168646 4369131 ~ 4373972 (+)
CI01000001_04328211_04330988 NA coding upstream 211566 4327576 ~ 4331052 (+)
CI01000001_04567822_04568927 NA coding downstream 13791 4567464 ~ 4569260 (+)
CI01000001_04586080_04595939 NA coding downstream 32223 4585896 ~ 4596418 (+)
CI01000001_04624476_04679572 NOL4LB coding downstream 70803 4624476 ~ 4679829 (+)
CI01000001_04688934_04700615 HCK, SRMS coding downstream 135261 4688934 ~ 4700704 (+)
CI01000001_04701645_04713999 NA coding downstream 147972 4701645 ~ 4714153 (+)
G15371 NA non-coding upstream 51237 4486920 ~ 4491381 (+)
G15370 NA non-coding upstream 55819 4481838 ~ 4486799 (+)
G15360 NA non-coding upstream 186002 4356216 ~ 4356616 (+)
G15338 NA non-coding upstream 194037 4343888 ~ 4348581 (+)
G15404 NA non-coding downstream 12597 4566270 ~ 4566542 (+)
G15389 NA non-coding downstream 45004 4598677 ~ 4726740 (+)
CI01000001_04723418_04724292 NA non-coding downstream 167002 4723354 ~ 4725671 (+)
G15395 NA non-coding downstream 200044 4753717 ~ 4758419 (+)
G15416 NA non-coding downstream 243803 4797476 ~ 4797794 (+)
CI01000001_03618075_03620436 NA other upstream 921167 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2871614 1667762 ~ 1671167 (+)
G13051 NA other upstream 3497466 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 4050561 483853 ~ 488825 (+)
G12614 NA other upstream 4231677 309144 ~ 310941 (+)
G15794 NA other downstream 507545 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 733076 5279837 ~ 5287698 (+)
G15995 NA other downstream 1158212 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2978899 7531541 ~ 7540586 (+)
G17234 NA other downstream 3478451 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021570 commd7 coding NC_007134.7 CM002907.2 17102960 ~ 17114092 (+)