G15370


Basic Information

Item Value
gene id G15370
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4481838 ~ 4486799 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17170
CTCAGCATCTNNNNNNNNNNNNNNNAGATGGCATCAGCAGTCTGTTCCTTCGGATGAAGAACACTAAGCAGTCTGATCTTGTTTTCCCCAGTAGCTTTGTCAAAAAAGCCCAACAGGACCACATTGGCCTCTTTCTCGTCCTCAAGCTCCACCGCATGGTATAAATAAAGGCAGTATGGAGTCTGACTGCAGGACGCTGTAACATCTTCCCAGTATTTCTTGCCTAATACTAGACTGTACTTGCTATTGGTACAGTTTGATCCAGCATCAGCTGAGGTAGATGGGCAATACTTTCTGGTGAAACACATCCAGGAGAAAGACTCATGTGACACCTTCTTAGCATTTATCATTTTCTGGTTTAGACACTTTGTTTCTACAGGACTGTAGAGTGTTGAAGAATGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU17170 True 404 lncRNA 0.42 2 4481838 4486799

Neighbor

gene id symbol gene type direction distance location
CI01000001_04462781_04463560 NA coding upstream 17225 4462781 ~ 4464613 (+)
CI01000001_04433559_04437385 NA coding upstream 44388 4433559 ~ 4437450 (+)
CI01000001_04422037_04431229 NA coding upstream 49706 4422037 ~ 4432602 (+)
CI01000001_04369131_04373697 SNPHB, SNPH coding upstream 107866 4369131 ~ 4373972 (+)
CI01000001_04328211_04330988 NA coding upstream 150786 4327576 ~ 4331052 (+)
CI01000001_04543164_04553053 COMMD7 coding downstream 55819 4542618 ~ 4553673 (+)
CI01000001_04567822_04568927 NA coding downstream 80665 4567464 ~ 4569260 (+)
CI01000001_04586080_04595939 NA coding downstream 99097 4585896 ~ 4596418 (+)
CI01000001_04624476_04679572 NOL4LB coding downstream 137677 4624476 ~ 4679829 (+)
CI01000001_04688934_04700615 HCK, SRMS coding downstream 202135 4688934 ~ 4700704 (+)
G15360 NA non-coding upstream 125222 4356216 ~ 4356616 (+)
G15338 NA non-coding upstream 133257 4343888 ~ 4348581 (+)
G15288 NA non-coding upstream 207853 4240551 ~ 4273985 (+)
G15287 NA non-coding upstream 348314 4100122 ~ 4133524 (+)
G15371 NA non-coding downstream 121 4486920 ~ 4491381 (+)
G15404 NA non-coding downstream 79471 4566270 ~ 4566542 (+)
G15389 NA non-coding downstream 111878 4598677 ~ 4726740 (+)
CI01000001_04723418_04724292 NA non-coding downstream 233876 4723354 ~ 4725671 (+)
G15395 NA non-coding downstream 266918 4753717 ~ 4758419 (+)
CI01000001_03618075_03620436 NA other upstream 860387 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2810834 1667762 ~ 1671167 (+)
G13051 NA other upstream 3436686 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3989781 483853 ~ 488825 (+)
G12614 NA other upstream 4170897 309144 ~ 310941 (+)
G15794 NA other downstream 574419 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 799950 5279837 ~ 5287698 (+)
G15995 NA other downstream 1225086 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3045773 7531541 ~ 7540586 (+)
G17234 NA other downstream 3545325 8032124 ~ 8032483 (+)

Expression


Co-expression Network