CI01000001_04688934_04700615 (HCK, SRMS)


Basic Information

Item Value
gene id CI01000001_04688934_04700615
gene name HCK, SRMS
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4688934 ~ 4700704 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04688934_04700615.mRNA
ATGATCGCGGCCAGTGCGTTAGCTCAACAAAGGCGATCCCGGTATAGAATCGCTACGGACGGTCTGTCACCATCGCTGCCAGATATTCTAGCTACCCTGGAGTCCGTAGAAGGAAAGGGCTGGGATGGAGAAGTGTTGTCGCAGCTGTATGCCATGCCTGAAGAGGTTATGGGACTGGATATGGCCCGAATTTCACTATCCGAACGTCGTTCGTCCGGCCGAGATCCGCACCGTTTCAGTGAGGAAGAGCTGACGGTGAAAGAAGGGGACAAACTGTCTGTCATAGAAAAGAGGGGAGATTATGTATTTGCCAAGAAGCTGACGGGATCCCTGGAGTCCGGACTGGTCCCTGCTAATTATGTGGCCCTAGTACAGGATGAATTCGCTAACTACAAATGGTACTATGGGAATATAAACAGACAAAAGGCTGAGAAGCTGCTTTTGGCTTCTCAGAATAAAACCGGTTCCTTTCTGGTGAGGATCAGTGAGAGCCACAGCGATGAATATACTATCTCAGCCAGAAGTGAAAATAGTGTCTTCCATTTCCGTATTCATCGCTCAGCAATTGGTGCTTACTTTGTATCTGACAAGATCTCTTTTGGCACTCTGGATGAGCTCATCAGATACTACCAGCACAACTCCAGAAGTCTGGGATGCCCCTTAGACCAGCCGTGCGTACAGCAAAGGGAGTTGTTTGACATGGAGCCATGGGAGCGGCCGAGGGAGGAGTTCCAGCTACTCAAGAAGCTCGGGGAAGGCCATTTTGGAGAAGTCTGGGAAGCTGTCTGGACCACAAAGCAGCAGAAAGTGGCCATCAAGATGCTCAAACAAGAGGACACAAAGGTGGATGAGTTTGTGAAGGAGGTCCACGCACTGAAGAACCTGCACCATCCGAAACTCATTCAGCTGTTGGCTCTCTGCACACGAGGAGAGCCGGTCTACATTGTCACAGAGCTCATGACTAAAGGAAGTCTCAAATCATACCTTTCTTCACCGGAAGGTCAGGTGTTGACCTCTGCTCACCTGATCTACATGGCTGGTCAGATAGCAGAAGGAATGGCGTATCTGGAAGATCGACACATTGTCCACAGAGATTTGGCAGCTCGAAACATCCTGGTTGGAGAAGACTTGGTGTGTAAAGTGGCTGACTTTGGTCTGGCTCGCATCATCAAGGATAGTGTGTATACAGCTAGTAGAAACACCAAGATTCCTGTACGGTGGACAGCTCCAGAAGCTGCTCTCTACCAGCGTTTCTCTGTCAAATCTGATGTCTGGTCCTTTGGAGTGCTGCTGTACGAGATGATGTCACGTGGAAAGATGCCGTATGATGGGAAGAATAATAAGGAGGTGTTGGAGATCCTGTCATCGGGTTACAGGTTACCGTGTCCAAATCGCTGCCCCCCAAACATCTACCGCATTATGATGGAATGCTGGCACGCGGAGGCTTCCAAACGGCCCTCGTTCCACGCCCTTCACAGTCAGCTGGACAATATCTACTCCAGAATCTACTTCAAAACCATTGAGGTGTAGAAGAGGTGGACTGAAAGGGAGAGTGAAGAAAAGGTTTGCATGGACAACAGTGCAGATAAGAAAGACTCTCTTTTTGATTGCTTGTGTTA

Function

symbol description
hck Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human HCK (HCK proto-oncogene, Src family tyrosine kinase).
srms Enables protein tyrosine kinase activity. Involved in peptidyl-tyrosine autophosphorylation. Located in cytoplasm.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08895 SRMS; tyrosine-protein kinase Srms

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04688934_04700615.mRNA True 1619 mRNA 0.49 10 4688934 4700704

Neighbor

gene id symbol gene type direction distance location
CI01000001_04624476_04679572 NOL4LB coding upstream 9105 4624476 ~ 4679829 (+)
CI01000001_04586080_04595939 NA coding upstream 92516 4585896 ~ 4596418 (+)
CI01000001_04567822_04568927 NA coding upstream 119674 4567464 ~ 4569260 (+)
CI01000001_04543164_04553053 COMMD7 coding upstream 135261 4542618 ~ 4553673 (+)
CI01000001_04462781_04463560 NA coding upstream 224321 4462781 ~ 4464613 (+)
CI01000001_04701645_04713999 NA coding downstream 941 4701645 ~ 4714153 (+)
CI01000001_04723418_04724292 NA coding downstream 22714 4723354 ~ 4725671 (+)
CI01000001_04773238_04776581 MGC83062, GID8, GID8.L, CT011, GID8A, GID8B coding downstream 71997 4772701 ~ 4777329 (+)
CI01000001_04779079_04792659 SLC17A9B, SLC17A9 coding downstream 78233 4778937 ~ 4792827 (+)
CI01000001_04901365_04901652 NA coding downstream 200571 4901275 ~ 4902567 (+)
G15404 NA non-coding upstream 122392 4566270 ~ 4566542 (+)
G15371 NA non-coding upstream 197553 4486920 ~ 4491381 (+)
G15370 NA non-coding upstream 202135 4481838 ~ 4486799 (+)
CI01000001_04422037_04431229 NA non-coding upstream 256332 4422037 ~ 4432602 (+)
G15360 NA non-coding upstream 332318 4356216 ~ 4356616 (+)
G15395 NA non-coding downstream 53013 4753717 ~ 4758419 (+)
G15416 NA non-coding downstream 96772 4797476 ~ 4797794 (+)
G15419 NA non-coding downstream 100269 4800973 ~ 4801530 (+)
G15789 NA non-coding downstream 234667 4935371 ~ 4935990 (+)
CI01000001_03618075_03620436 NA other upstream 1067483 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3017930 1667762 ~ 1671167 (+)
G13051 NA other upstream 3643782 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 4196877 483853 ~ 488825 (+)
G12614 NA other upstream 4377993 309144 ~ 310941 (+)
G15794 NA other downstream 360514 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 586045 5279837 ~ 5287698 (+)
G15995 NA other downstream 1011181 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2831868 7531541 ~ 7540586 (+)
G17234 NA other downstream 3331420 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location