G15389


Basic Information

Item Value
gene id G15389
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4598677 ~ 4726740 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17194
TATTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCTGTTTAAGACAATTTATTGTGCTGAAAAACACAGGTTAAGACAATAACAAGTAACAAAATCTCCATCAGTGTTACAGATGTGTAAAAATGTACAAAATTCTTTTTGCAAGTTTCAGCTCATCCATTTATTACATGATATATAAAACAATGAATACAAAAAAGAAAGATGAAAAAGTACTAAAACAGCCCATTATATGGATGGGAAATTAAAAGAAAAAAAAGGGAGCCATTTCCGTCCCCTAGCGTTGGTGTCCTGATCTGGTCTCGGATTCAGGAATGAGGAGAACTCCCCGCCTCCGACTTGCCTCCATCGCTACATTCGCTCGCTTGCCTCATCACCATCTCCCGGGCAACACATGTCACCTGCCCATTGGTCACACTCACCACCCCTGACCTGCAGAGAGCCAACCAGATTAAGAATTATATCAATTGATATGACAAACCGATACACTCATTACAAA
>TU17193
GGTGTACAGTTCATTCATTATTAAAGACAAAAAAAAAAAAGAAGAAGTCCAGGAGCAGTAGTGGGCTGTTTAAGACAATTTATTGTGCTGAAAAACACAGGTTAAGACAATAACAAGTAACAAAATCTCCATCAGTGTTACAGATGTGTAAAAATGTACAAAATTCTTTTTGCAAGTTTCAGCTCATCCATTTATTACATGATATATAAAACAATGAATACAAAAAAGAAAGATGAAAAAGTACTAAAACAGCCCATTATATGGATGGGAAATTAAAAGAAAAAAAAGGGAGCCATTTCCGTCCCCTAGCGTTGGTGTCCTGATCTGGTCTCGGATTCAGGAATGAGGAGAACTCCCCGCCTCCGACTTGCCTCCATCGCTACATTCGCTCGCTTGCCTCATCACCATCTCCCGGGCAACACATGTCACCTGCCCATTGGTCACACTCACCACCCCTGACCTGCAGAGAGCCAACCAGATTAAGAATTATATCAATTGATATGACAAACCGATACACTCATTACAAA
>TU17199
GGTGTACAGTTCATTCATTATTAAAGACAAAAAAAAAAAAAAAAAAGAAGAAGTCCAGGAGCAGTAGTGGGCTGTTTAAGACAATTTATTGTGCTGAAAAACACAGGTTAAGACAATAACAAGTAACAAAATCTCCATCAGTGTTACAGATGTGTAAAAATGTACAAAATTCTTTTTGCAAGTTTCAGCTCATCCATTTATTACATGATATATAAAACAATGAATACAAAAAAGAAAGATGAAAAAGTACTAAAACAGCCCATTATATGGATGGGAAATTAAAAGAAAAAAAAGGGAGCCATTTCCGTCCCCTAGCGTTGGTGTCCTGATCTGGTCTCGGATTCAGGAATGAGGAGAACTCCCCGCCTCCGACTTGCCTCCATCGCTACATTCGCTCGCTTGCCTCATCACCATCTCCCGGGCAACACATGTCACCTGCCCATTGGTCACACTCACCACCCCTGACCTGCAGAGAGCCAACCAGATTAAGAATTATATCAATTGATATGACAAACCGATACACTCATTACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17194 False 512 lncRNA 0.37 3 4598677 4726740
TU17193 False 527 lncRNA 0.39 2 4726188 4726740
TU17199 True 533 lncRNA 0.39 2 4726188 4726740

Neighbor

gene id symbol gene type direction distance location
CI01000001_04586080_04595939 NA coding upstream 2259 4585896 ~ 4596418 (+)
CI01000001_04567822_04568927 NA coding upstream 29417 4567464 ~ 4569260 (+)
CI01000001_04543164_04553053 COMMD7 coding upstream 45004 4542618 ~ 4553673 (+)
CI01000001_04462781_04463560 NA coding upstream 134064 4462781 ~ 4464613 (+)
CI01000001_04433559_04437385 NA coding upstream 161227 4433559 ~ 4437450 (+)
CI01000001_04773238_04776581 MGC83062, GID8, GID8.L, CT011, GID8A, GID8B coding downstream 45961 4772701 ~ 4777329 (+)
CI01000001_04779079_04792659 SLC17A9B, SLC17A9 coding downstream 52197 4778937 ~ 4792827 (+)
CI01000001_04901365_04901652 NA coding downstream 174535 4901275 ~ 4902567 (+)
CI01000001_04914279_04922772 RND1B, RND1, RND1A coding downstream 187410 4914150 ~ 4923679 (+)
CI01000001_04936808_04943256 PRIM1 coding downstream 210068 4936808 ~ 4943455 (+)
G15404 NA non-coding upstream 32135 4566270 ~ 4566542 (+)
G15371 NA non-coding upstream 107296 4486920 ~ 4491381 (+)
G15370 NA non-coding upstream 111878 4481838 ~ 4486799 (+)
CI01000001_04422037_04431229 NA non-coding upstream 166075 4422037 ~ 4432602 (+)
G15360 NA non-coding upstream 242061 4356216 ~ 4356616 (+)
G15395 NA non-coding downstream 26977 4753717 ~ 4758419 (+)
G15416 NA non-coding downstream 70736 4797476 ~ 4797794 (+)
G15419 NA non-coding downstream 74233 4800973 ~ 4801530 (+)
G15789 NA non-coding downstream 208631 4935371 ~ 4935990 (+)
G15798 NA non-coding downstream 276430 5003170 ~ 5003390 (+)
CI01000001_03618075_03620436 NA other upstream 977226 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2927673 1667762 ~ 1671167 (+)
G13051 NA other upstream 3553525 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 4106620 483853 ~ 488825 (+)
G12614 NA other upstream 4287736 309144 ~ 310941 (+)
G15794 NA other downstream 334478 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 560009 5279837 ~ 5287698 (+)
G15995 NA other downstream 985145 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2805832 7531541 ~ 7540586 (+)
G17234 NA other downstream 3305384 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location