CI01000001_04369131_04373697 (SNPHB, SNPH)


Basic Information

Item Value
gene id CI01000001_04369131_04373697
gene name SNPHB, SNPH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4369131 ~ 4373972 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04369131_04373697.mRNA
GTTTATAGAGCTAGACTACACACCCATGGAGTCAGGCATTATGGTCTCTATGAGACAGAGCAGAGGATTTGTGACACCAAAGTCCCCGGAACGCCACTGTCGTGTGTGTTTGTGCATTCTGGTTATACCTTGTCTTTGGTCCTCTTAAGTGGCTTTGAATGTGACACTGAATTTGTGATTCTTTTATGGCACAGACGAAGTCCAGCACCCGTCAGTAACCGCGATCCCTATGGAAATGCCTCTCTTAGCAGCAGTAGCAATTCAGGATCATGCAAGGGCAGTGATGGAAGCCCAACCCATAGGCATCACATGAAATACACTTCCTGCAATGATAACCATGGAATCCGGCCCCCTCCACCTGAGCAATATCTAACTCCACTGCAACAGAAAGAGGTGTGTATCAGACACCTGAGAGCACGGCTTAAAGAGACCATCGACAGACTGCAGGACAGGGACACTGAGATTGATGAGTTGCGTACTCAGCTGTCTCGTATGCAAGAAGACTGGATTGAAGAGGAGTGCCACCGCGTGGAGGCCCAGCTGGCTCTGAAGGAGGCTCGCAGGGAGATCCAGCAGCTTAAACAGGTTGTAGATGTTGTCCGATCCAGTCTGGGAGACGCTGATACGGGGGTGCAGAAGTGCTTCCAAGACATAAACCTCCAGAACCACAAGCTAGAGTCTTTATTGCAAAGCATGGAGATGGCTCAGATCGGCGCCACCAAAGCAGGAGAAGCCCTAGCAGGTGGAGGGGTGGTGGGGGCAGGGCTGGAGGTCAGCGAGGGCCTGGTGGAGTCTTCCGAAGGCTCCCCAGCTCGCTCGCTTACCCGCAGCTCTACCTACACCAAGCTGAGTGACCAGACCGGCCCGGAACGTGGGGGTAATGAAAACGGGTGTGACATTCCATGTTTGTCAGGCGAGGGCACGCAGGACAGCGGGTTTGTTTGCTGCGGAGACAGTGGAAGAGGAGCCAGCAAGGCAGATCTGCTCCTGGAGGCTGCATTTTTGTCTCAAGAGACTGCTTCGCTGCTCAATGCGTACTCCCGCCTGCCACACTCCTCCACCTATGAGGTGCTGTGCAACAGTGAGCCAGGAGTTGTGCCACTCCGCTGCAGTGGGATCGGAATGGGAACCAGTGTTAGCATAAGTAATCCATGTCTGTCGCATCATCACTTATACCTGCACCACCTACGTGAGCAAGGCATTCAAACCGACCATTCTCCGGCTTCAGCCCCTGCCCACGGCCCCAGTACATCTTTTAACTCTGATCTGGACACTATTGCTGAGCGTACCTTCCGCTCTCAGGCCTGCAGCCCGACCTCTACGTGGATGTCTGACGAGGGAGATGATCTGGAGTCGGTAACTACAGAGTCAGCCATTACTGCAACAGTTGCCACAACTTCCATTGTCAATGAATTTTCCACTAAGTCTGCACCGGTTGTTGCAATGGAGCCTTGCGCACCAACTGTATCAGTTACAAAAGGACCTGCATCTTTAGCGTTGATCCCCATGGAGTCCTCTGTCAAGGAGACTACTGTTTCAGCGTCCCTTACAGTCTTACCAATCACAACGACAGCTTTGACCACAGAGACCATTGGATCTCCAGTAACTAACTCTGTTCAACCTCAACCTCTAACAGACCCTTTGCCAAACCCTGACACCTCCCCTTGCTCTGTGCAGCCATTGGTTGAGACAGAAGAGGACACCCTTCCACAGACCACTCAGCCTTGTAGTGTACTTACAGAGGCTGGGGTTGCAGGGGATAATGTTATCAATATAGATGCAGATGATGAAGATGAGGTTGATGAAAGTGCTACGAACACAGAGTCCAAGTCGTCTAGCTGTGGTTTACCAGTAAAGAACTACTGGAGCCGGCACTTCCTAGTGGATTTGCTTGCAGTGGTCGTGCCAGTGGTGCCCACAGTGGCGTGGCTCTGTCGGGGTCCACGCCGGGATGGTCAGCCTATGTACCATATTGGTTCTCTATTGCGGGGTTGCTGCACCGTGGCCCTCCATTCCCTGCGCCGAGGAGGTGGTCTTCGACATTACCCCGCAGGAGGAGGTGGTCCAGGAGGAATGAATATATGAGACCTTCTCTTCTGTCTTGGGAAGCCCTGAAGCCAGTGATATCACTGTTCTTCTGTAAGATGTGCAATAAGAGAGTGGTTAAATATTAATTGAGGCAACCAGTGGAAGCATAGTGTCTGAGCACAGCACCTTAATGCTGTGGTTCTCTATGGTCTATATTCAAGAGGAGATAAGAATGAGGAAGTGGAATCACTAGCATGTATTTACACCTACAAATAAGATGCTCATGAAGACTTCATGCGAGCTTTCACCTTTCTCCACAACTGCTACACTGA

Function

symbol description
snphb Predicted to enable syntaxin-1 binding activity. Acts upstream of or within with a positive effect on maintenance of mitochondrion location. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic microtubule and mitochondrion. Is expressed in brain; eye; and retinal ganglion cell layer. Orthologous to human SNPH (syntaphilin).
snph Predicted to enable syntaxin-1 binding activity. Predicted to be involved in neuron differentiation. Located in cytoplasmic microtubule.

GO:

id name namespace
GO:0017075 syntaxin-1 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04369131_04373697.mRNA True 2360 mRNA 0.51 4 4369131 4373972

Neighbor

gene id symbol gene type direction distance location
CI01000001_04328211_04330988 NA coding upstream 38079 4327576 ~ 4331052 (+)
CI01000001_04311013_04315588 NA coding upstream 53366 4311013 ~ 4315765 (+)
CI01000001_04296723_04300348 NA coding upstream 68156 4296601 ~ 4300975 (+)
CI01000001_04085864_04225894 PLXNA2 coding upstream 143237 4085864 ~ 4225894 (+)
CI01000001_03983212_04011240 NA coding upstream 357535 3983128 ~ 4011596 (+)
CI01000001_04422037_04431229 NA coding downstream 48065 4422037 ~ 4432602 (+)
CI01000001_04433559_04437385 NA coding downstream 59587 4433559 ~ 4437450 (+)
CI01000001_04462781_04463560 NA coding downstream 88809 4462781 ~ 4464613 (+)
CI01000001_04543164_04553053 COMMD7 coding downstream 168646 4542618 ~ 4553673 (+)
CI01000001_04567822_04568927 NA coding downstream 193492 4567464 ~ 4569260 (+)
G15360 NA non-coding upstream 12515 4356216 ~ 4356616 (+)
G15338 NA non-coding upstream 20550 4343888 ~ 4348581 (+)
G15288 NA non-coding upstream 95146 4240551 ~ 4273985 (+)
G15287 NA non-coding upstream 235607 4100122 ~ 4133524 (+)
G15313 NA non-coding upstream 259771 4103809 ~ 4109360 (+)
G15370 NA non-coding downstream 107866 4481838 ~ 4486799 (+)
G15371 NA non-coding downstream 112948 4486920 ~ 4491381 (+)
G15404 NA non-coding downstream 192298 4566270 ~ 4566542 (+)
G15389 NA non-coding downstream 224705 4598677 ~ 4726740 (+)
CI01000001_03618075_03620436 NA other upstream 747680 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2698127 1667762 ~ 1671167 (+)
G13051 NA other upstream 3323979 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3877074 483853 ~ 488825 (+)
G12614 NA other upstream 4058190 309144 ~ 310941 (+)
G15794 NA other downstream 687246 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 912777 5279837 ~ 5287698 (+)
G15995 NA other downstream 1337913 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3158600 7531541 ~ 7540586 (+)
G17234 NA other downstream 3658152 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location