CI01000001_04085864_04225894 (PLXNA2)


Basic Information

Item Value
gene id CI01000001_04085864_04225894
gene name PLXNA2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4085864 ~ 4225894 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04085864_04225894.mRNA
TTCAACCACCTGACAGTTCACAAGACGACAGGGGCACTCTACATTGGTGCTGTCAACCGAGTCTACAAGTTATCGGGCAACCTAACACTCCTAGTATCCCATGATACTGGTCCAGAAGATGACAACAAGGCCTGCTACCCTCCACTAATCGTTCAGCCTTGCACTGAACCACTGGTTTCTACCAACAACATCAACAAACTCTTACTCATTGACTACTCTCAGAATCGACTACTTGCCTGCGGAAGCCTCTACCAAGGTGTCTGCAAACTGCTACGGTTGGACGACCTCTTCATCTTGGTGGAGCCCTCTCACAAAAAGGAGCACTACCTTTCCAGTGTCAACCAGACTGGCACCATGTATGGAGTCATCGTGCCTTCGCAGGGCAAGGATGGGACCCTCTTCATTGGTACCGCTGTGGATGGGAAACAAGACTACTTTCCGACCATCTCCAGCCGGAAGCTTCCTCGTGACCCGGAGTCTTCGGCAATGCTGGACTATGAGCTACACACGGACTTTGTTTCATCGCTCATCAAGATTCCCTCCGACACTCTGGCTTTGGTCTCTCATTTTGACATTTACTACATCTATGGCTTTGCCAGTGGCAATTTCGTCTACTTTCTGACCGTGCAGCCGGAAACACCTGAGAACAGCATGTCTTCCAGCGGGCCCTCAAATGACCTGTTTTACACCTCTCGAATCGTACGGCTCTGCAAAGATGACCACAAATTCCACTCCTATGTGTCGTTGCCTATCGGTTGTGTCCGAAACAGGGTTGAGTACCGCCTTCTGCAAGCGGCCTACTTGGGCAAGCCTGGACGAGTGCTTGCGGCGTCCCTTAACATTAGTGCTCAGGATGATGTGCTCTTTGCTGTCTTTTCCAAAGGTCAAAAACAGTACCACCATCCGCCTGATGACTCGGCCCTCTGCGTCTTCAGCATCCGGGACATCAATGCACGGATCAAGGAGCGCATGCAATCCTGCTATCAGGGAGAGGGAAACTTAGAGCTCAACTGGCTGTTGGGAAAGGATGTACCTTGTACCAAAGCGCCTGTCCCTATTGATGACTCCTTCTGCGGTTTGGACATCAACCAGCCCCTTGGCGGCTCTCAGCTGGTGACCGGACACACGCTTTATACGGAAAGCCGGGATCGCATGACCTCGGTGACCTCCTACGTCTATAATGGCTACTGCGTGGCTTTTGTTGGCACCAAGAGTGGACGTCTGAAAAAGATTCGGGTTGACGGTCCTCCTCAAGGTGGCGTCCAGTATGAAACTCTGCCGGTGATCAAAGATGGAAGCCCGATTCTCAGAGACATGGCTTTTTCCCTGGACAACAGCTATATCTACGTCATGTCGGAGAGACAGGTCACACGGGTACCGATCGAGTCGTGTGAGCAGTACGGCACATGTGGAGAGTGTCTGAGCTCAGGAGATCCTCACTGTGGCTGGTGTGTGCTGCACAACATGTGTTCTCAAAGGGATCGTTGCGAGCGGGCGAACGAGCCGTACCGTTTCGCCGCAACGCTGAGCCAGTGTGTGAAAGCCACCGTGTACCCGGACAGCATCGCTGTGTCTGAACCCAGTGTACCGCTGCTTGTGAAAGTGACAGATGTTCCAGATCTTTCCGCTGGAATCACCTGCTCCTTCGGGAACCTGACGGAGGTTGAGGGCAGAGTGGATGGGAATCAGATTCTCTGCACATCTCCCGCTGCTAAAGATGTTCCCATCATCCCCACAGATCAAGACTGGTCGGGTGTCGAGCTCAGATTGAACTCGAAGGAAACGGGTCAGATGCTAATTAGCACAGAGGTGAAGTTCTACAACTGCAGCGTGCACCAGCTGTGTCTTTCCTGTGTAACCAGTTCCTTCCGCTGTCATTGGTGCAAGTACAGAAACCTCTGCACCCACGATCCCTCCAGCTGTTCCTTCCAGGAGGGACGCGTCAATGCCTCAGAGGACTGTCCTCAACTGGTCCGTTCTGAGGAGATCCTCATCCCAGCAGGGGAAGTGAAGCCCATCACCCTGAAAGCCCGAAACCTTCCCCAACCCCAGTCGGGTCAGCGTGGCTACGAGTGTGTGTTACACATACAAGGAGTCAGTCACAGAGTCACAGCGCTCAGATTCAACAGCTCCAGCGTACAGTGCCAGAACAGCTCGTATCTGTATGAAGGGATGAGAATTAGTGAACTGCCAGTGGATTTCTCAGTGGTGTGGAATGGAAATTTCATCATTGACAATCCTGAGAACATCAAAGTGAATCTGTATAAGTGTGGCGCTCAGAGGGACAGCTGTGGCGTGTGTTTGAAGGCCGAGAGGAAGTTCCAGTGTGGCTGGTGCAGTATGGAGGGCCGCTGTACCCTACGCCAGCACTGTCCCATGTCCAACCCTTACACCAGCCGCTGGCTACACCTCGCCAGCACAAACGTGAAGTGCACCAACCCTCGAATCACTGAGGTAACCCCAGTGGCAGGACCACCAGAAGGGGGCACCAGAGTGACCATCCGTGGTGTGAACCTGGGCCTGTCCTTCTCAGACATGGTCAACAATGTGCAGATAGCAGGAGTCCAATGCACCCCGCAGGAGAACGGCTACATCATCGCTGAACAGATTGTTTGTGAGATGGATGCAACTCCTAAGGACAGTAAGCCCGGCCCTGTCCATTTGTGTGTAGGGGAGTGTAAACCGGAGCTCCAGACCCGCTCTTCTCAGCTCTATTCCTTTGTGATGCCATCAGTCACAGGTTTGTCCCCCAGTCGAGGTCCAGAGTCTGGAGGAACTAAAGTGACCATAATGGGGGAAAACCTGGGGGCGGGCAGCAGAGTCACTGTGCTTTTTGGGAACCAGACCTGCGAGTTTTACGACCGGTTAAAAGCATCTTTAATCAGAACCTTCTCAAAAGCTTATTATCTTCTAAGCGCCACATCA

Function

symbol description
plxna2 Predicted to enable semaphorin receptor activity. Acts upstream of or within optic vesicle formation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; hatching gland; olfactory field; optic vesicle; and retina. Orthologous to human PLXNA2 (plexin A2).

GO:

id name namespace
GO:0021785 branchiomotor neuron axon guidance biological_process

KEGG:

id description
K06820 PLXNA; plexin A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04085864_04225894.mRNA True 2925 mRNA 0.53 15 4085864 4225894

Neighbor

gene id symbol gene type direction distance location
CI01000001_03983212_04011240 NA coding upstream 74268 3983128 ~ 4011596 (+)
CI01000001_03867875_03890850 NA coding upstream 194875 3867840 ~ 3890989 (+)
CI01000001_03865986_03866675 NA coding upstream 218712 3865357 ~ 3867469 (+)
CI01000001_03830254_03833027 NA coding upstream 252837 3830254 ~ 3833027 (+)
CI01000001_03821989_03823336 SLC48A1A coding upstream 262280 3821989 ~ 3823584 (+)
CI01000001_04296723_04300348 NA coding downstream 70707 4296601 ~ 4300975 (+)
CI01000001_04311013_04315588 NA coding downstream 85119 4311013 ~ 4315765 (+)
CI01000001_04328211_04330988 NA coding downstream 101682 4327576 ~ 4331052 (+)
CI01000001_04369131_04373697 SNPHB, SNPH coding downstream 143237 4369131 ~ 4373972 (+)
CI01000001_04422037_04431229 NA coding downstream 196143 4422037 ~ 4432602 (+)
G15298 NA non-coding upstream 45111 4040302 ~ 4040753 (+)
G15245 NA non-coding upstream 104210 3981451 ~ 3981654 (+)
G15239 NA non-coding upstream 108013 3977041 ~ 3977851 (+)
G15225 NA non-coding upstream 132947 3952372 ~ 3952917 (+)
G15208 NA non-coding upstream 146184 3938659 ~ 3939680 (+)
G15288 NA non-coding downstream 14657 4240551 ~ 4273985 (+)
G15338 NA non-coding downstream 117994 4343888 ~ 4348581 (+)
G15360 NA non-coding downstream 130322 4356216 ~ 4356616 (+)
G15370 NA non-coding downstream 255944 4481838 ~ 4486799 (+)
CI01000001_03618075_03620436 NA other upstream 464413 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2414860 1667762 ~ 1671167 (+)
G13051 NA other upstream 3040712 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3593807 483853 ~ 488825 (+)
G12614 NA other upstream 3774923 309144 ~ 310941 (+)
G15794 NA other downstream 835324 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1060855 5279837 ~ 5287698 (+)
G15995 NA other downstream 1485991 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3306678 7531541 ~ 7540586 (+)
G17234 NA other downstream 3806230 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022496 plxna2 coding NC_007134.7 CM002907.2 32579495 ~ 33038423 (-)