G15239


Basic Information

Item Value
gene id G15239
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3977041 ~ 3977851 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17029
GTGATTTACGTATTTACTTCTTATGTTAGTGTTTCTTGGGACAATGCTTTTCTCACAAAGTTTAAGGTCAATATGAACATTATATATATACTATGAATATTATATATATATACACTATATTGCCAAAAGTATTGGGACACCCCTCCAAATCATTGAATTCAGGTGTTCCAATCACTTCCATGGCCACAGGTGTATAAAATCAAGCACCTAGGCATGCAGACTGCTTCTACAAACATTTGTGAAAGAATGGGTCGCTCTCAGGAGCTCAGTGAATTCAGGCGTGGTACTGTGATAGGTTGCCACCTGTGCAATAAGTCCGTTCATGAAATTTCCTCACTACTAAATATTCCATGGTCAACTGTTAGTGGTATCATAACAAAGTGGAAGCAGTTGGGAACAGCAGCAACTCAGCCATGAAGTGTTAGGCCACGTAAAATCACAGAGCGGGGTCAGCGCATGCTGAGGTGCACAGTGCGCAGAAGTCGCCAACTTTCTGCAGAGTCAATAGCAACAGACCTCCAAACATCGTGTGGCCTTCAGATTAGCTCAAGAACAGTGCGTAGAGAACTTCATGGAATGAGTTTCCATGGCCGAGCAGCTGCATCCAAGCCTTAAATCACCAAGTGCAATGCAAAGCGTCGGATGCAGTGGTGTAAAGCACGCCGCCACTGGACTCTAGAGCAGTGGAGACGTGTTCTCTGGAGTGACAAATCACGCTTCTCTGTCTGGCAATCCGATGGACGAGTCTGGGTTTGGCAGTTGCCAGGAGAACGGTACTTACCTGATTGCATTGTGCCAAGTGTAAAGTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17029 True 811 lncRNA 0.45 1 3977041 3977851

Neighbor

gene id symbol gene type direction distance location
CI01000001_03867875_03890850 NA coding upstream 86052 3867840 ~ 3890989 (+)
CI01000001_03865986_03866675 NA coding upstream 109889 3865357 ~ 3867469 (+)
CI01000001_03830254_03833027 NA coding upstream 144014 3830254 ~ 3833027 (+)
CI01000001_03821989_03823336 SLC48A1A coding upstream 153457 3821989 ~ 3823584 (+)
CI01000001_03719251_03775929 ITGA5 coding upstream 200616 3718190 ~ 3776425 (+)
CI01000001_03983212_04011240 NA coding downstream 5277 3983128 ~ 4011596 (+)
CI01000001_04085864_04225894 PLXNA2 coding downstream 108013 4085864 ~ 4225894 (+)
CI01000001_04296723_04300348 NA coding downstream 318750 4296601 ~ 4300975 (+)
CI01000001_04311013_04315588 NA coding downstream 333162 4311013 ~ 4315765 (+)
CI01000001_04328211_04330988 NA coding downstream 349725 4327576 ~ 4331052 (+)
G15225 NA non-coding upstream 24124 3952372 ~ 3952917 (+)
G15208 NA non-coding upstream 37361 3938659 ~ 3939680 (+)
G15202 NA non-coding upstream 42206 3934572 ~ 3934835 (+)
G14931 NA non-coding upstream 98244 3878519 ~ 3878797 (+)
G15245 NA non-coding downstream 3600 3981451 ~ 3981654 (+)
G15298 NA non-coding downstream 62451 4040302 ~ 4040753 (+)
G15287 NA non-coding downstream 122271 4100122 ~ 4133524 (+)
G15313 NA non-coding downstream 125958 4103809 ~ 4109360 (+)
G15288 NA non-coding downstream 262700 4240551 ~ 4273985 (+)
CI01000001_03618075_03620436 NA other upstream 355590 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2306037 1667762 ~ 1671167 (+)
G13051 NA other upstream 2931889 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3484984 483853 ~ 488825 (+)
G12614 NA other upstream 3666100 309144 ~ 310941 (+)
G15794 NA other downstream 1083367 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1308898 5279837 ~ 5287698 (+)
G15995 NA other downstream 1734034 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3554721 7531541 ~ 7540586 (+)
G17234 NA other downstream 4054273 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G124318 NA non-coding CI01000024 null 5788258 ~ 5788514 (-)
eurasian perch (Perca fluviatilis) G105149 NA non-coding NC_053121.1 CM020918.1 15569818 ~ 15570080 (-)
striped catfish (Pangasianodon hypophthalmus) G119680 NA misc NC_047601.1 CM018547.1 22974744 ~ 22994839 (+)