G15202


Basic Information

Item Value
gene id G15202
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3934572 ~ 3934835 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU16992
TGAAAATCCCAGTAGATCAGCAGTTTCTGAAATACTCAGACCAGCCCGTCTAGCACCAACAACCATGCCACGTTCAAAGTCACTTAAATCACCTTTCTTCCCCTTTCTGATGCTCAGTTTCTTCAGCAGATCGCCTTGACCATGTCTACATGCCTGATGATTGAGTTGCTACCATGTGATTGGCTGATTAGATCGATTTGGCTGATTAGATATGACATTATAATATATAATATAATATTTATATACAATATAAGCAAGCCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16992 True 264 lncRNA 0.40 1 3934572 3934835

Neighbor

gene id symbol gene type direction distance location
CI01000001_03867875_03890850 NA coding upstream 43583 3867840 ~ 3890989 (+)
CI01000001_03865986_03866675 NA coding upstream 67420 3865357 ~ 3867469 (+)
CI01000001_03830254_03833027 NA coding upstream 101545 3830254 ~ 3833027 (+)
CI01000001_03821989_03823336 SLC48A1A coding upstream 110988 3821989 ~ 3823584 (+)
CI01000001_03719251_03775929 ITGA5 coding upstream 158147 3718190 ~ 3776425 (+)
CI01000001_03983212_04011240 NA coding downstream 48293 3983128 ~ 4011596 (+)
CI01000001_04085864_04225894 PLXNA2 coding downstream 151029 4085864 ~ 4225894 (+)
CI01000001_04296723_04300348 NA coding downstream 361766 4296601 ~ 4300975 (+)
CI01000001_04311013_04315588 NA coding downstream 376178 4311013 ~ 4315765 (+)
CI01000001_04328211_04330988 NA coding downstream 392741 4327576 ~ 4331052 (+)
G14931 NA non-coding upstream 55775 3878519 ~ 3878797 (+)
G14917 NA non-coding upstream 82524 3851831 ~ 3852048 (+)
G14912 NA non-coding upstream 89731 3844469 ~ 3844841 (+)
G14911 NA non-coding upstream 93218 3841143 ~ 3841354 (+)
G15208 NA non-coding downstream 3824 3938659 ~ 3939680 (+)
G15225 NA non-coding downstream 17537 3952372 ~ 3952917 (+)
G15239 NA non-coding downstream 42206 3977041 ~ 3977851 (+)
G15245 NA non-coding downstream 46616 3981451 ~ 3981654 (+)
G15298 NA non-coding downstream 105467 4040302 ~ 4040753 (+)
CI01000001_03618075_03620436 NA other upstream 313121 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2263568 1667762 ~ 1671167 (+)
G13051 NA other upstream 2889420 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3442515 483853 ~ 488825 (+)
G12614 NA other upstream 3623631 309144 ~ 310941 (+)
G15794 NA other downstream 1126383 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1351914 5279837 ~ 5287698 (+)
G15995 NA other downstream 1777050 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3597737 7531541 ~ 7540586 (+)
G17234 NA other downstream 4097289 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G106069 NA non-coding NC_048566.1 CM023220.2 2587572 ~ 2588898 (+)
bowfin (Amia calva) G96059 NA non-coding CM030132.1 CM030132.1 4234671 ~ 4283832 (+)