CI01000001_04311013_04315588


Basic Information

Item Value
gene id CI01000001_04311013_04315588
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4311013 ~ 4315765 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04311013_04315588.mRNA
GTTGTCAGGGACAGACCACAGCAACTTCAACTAATGCTTCTCCAAACACGGGATCAGCCACGACATCAAATCTGCCAGGGGAAGCAACAACAGTCCCAGTCCCAGTAATAAACACAAAAATGCCAGCAAACTCAACCCCTGTGATCCCTGCTCAAACAACACCTGCTGAACCAAGCATACTTGGCACTTCTGGCCACAATGCTCCATCAGAAACCACCTCCTCTGGCAACAGCAAAGATGCCGGCCTGACTGAATCCCCACCAAAACAATCAGAAAACACAGCCTCCAATACCCCTTTTGTAGTGAAGCTAAACAATCCGGCCTTAAATCAAGCATCCGAACCTTCTAAAATAAGTTTCATACAGGGGACGCATGTCAGGAAGAGTGGAAAATGTCTAAAATGGGAAAGCTTAGGAATGCTAAATATCAAGGGTACTAGTGATATTAAAGAAGACAATGCCAACTCTGGGTCTTCTCCTGTGGTTTTCGTGTCTGTGCTGGTGACCGGCTTACTGCTTGCTGTCATAATAATCGGCATATACTACTTCAAGTGCCATCGGCGAAGCAACGGCAAAGGCATGAAACTGGCTGAGGAGTCATACATGGCTGATGAGGAGAACCAGGGCAATACTCTGGTGTCTGTGGCCCCTCTGAACCAACCCGAGCCTCAGGAAAAACCAAGTCTTAACGGAGAGTCACAAGAGGCAGTGAAGCCCCAAACTCCCCCTGCCGCCACCAATGGCCACTCTACCACCAAGACGGCAGACACAGAGCTGTGAATGAGCCGTTCTGCCATCAAGGGTCTGGGTGAAACGCTCAGCCCCTGTTTCTTAAACCCAACTCAATCTACTGCATATTGACCTTGGCCGTCAGAAGGCACGAGGGAGACAAAGACTCAAATTCCCACATTTACATGTAAATATCATGCAAAATGTTCCACTTAAAGTCATACGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04311013_04315588.mRNA True 956 mRNA 0.48 5 4311013 4315765

Neighbor

gene id symbol gene type direction distance location
CI01000001_04296723_04300348 NA coding upstream 10038 4296601 ~ 4300975 (+)
CI01000001_04085864_04225894 PLXNA2 coding upstream 85119 4085864 ~ 4225894 (+)
CI01000001_03983212_04011240 NA coding upstream 299417 3983128 ~ 4011596 (+)
CI01000001_03867875_03890850 NA coding upstream 420024 3867840 ~ 3890989 (+)
CI01000001_03865986_03866675 NA coding upstream 443861 3865357 ~ 3867469 (+)
CI01000001_04328211_04330988 NA coding downstream 11811 4327576 ~ 4331052 (+)
CI01000001_04369131_04373697 SNPHB, SNPH coding downstream 53366 4369131 ~ 4373972 (+)
CI01000001_04422037_04431229 NA coding downstream 106272 4422037 ~ 4432602 (+)
CI01000001_04433559_04437385 NA coding downstream 117794 4433559 ~ 4437450 (+)
CI01000001_04462781_04463560 NA coding downstream 147016 4462781 ~ 4464613 (+)
G15288 NA non-coding upstream 37028 4240551 ~ 4273985 (+)
G15287 NA non-coding upstream 177489 4100122 ~ 4133524 (+)
G15313 NA non-coding upstream 201653 4103809 ~ 4109360 (+)
G15298 NA non-coding upstream 270260 4040302 ~ 4040753 (+)
G15245 NA non-coding upstream 329359 3981451 ~ 3981654 (+)
G15338 NA non-coding downstream 28123 4343888 ~ 4348581 (+)
G15360 NA non-coding downstream 40451 4356216 ~ 4356616 (+)
G15370 NA non-coding downstream 166073 4481838 ~ 4486799 (+)
G15371 NA non-coding downstream 171155 4486920 ~ 4491381 (+)
CI01000001_03618075_03620436 NA other upstream 689562 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2640009 1667762 ~ 1671167 (+)
G13051 NA other upstream 3265861 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3818956 483853 ~ 488825 (+)
G12614 NA other upstream 4000072 309144 ~ 310941 (+)
G15794 NA other downstream 745453 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 970984 5279837 ~ 5287698 (+)
G15995 NA other downstream 1396120 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3216807 7531541 ~ 7540586 (+)
G17234 NA other downstream 3716359 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021813 si:dkey-261h17.1 coding NC_007134.7 CM002907.2 32499916 ~ 32532612 (+)