CI01000001_03865986_03866675


Basic Information

Item Value
gene id CI01000001_03865986_03866675
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3865357 ~ 3867469 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03865986_03866675.mRNA
CTATAAAAGGGTTTGATCACGTCAAAACATGATTTAACACTGAAAAAACATGAGTGTTTTGTTGTGCATGAGAAGCCACCGGCGTAACCATGAGGCAAAACCCTAAATTTGCATTAATTTTTCATTTTCGAGGAGCATGTCTGTCCACAAGGGGAATCAACGAAACAGCTAAAAAAGTTTCTTTGCATTGAATGTTGATGAACTTTAAAGCCCTCTGTAGAGCTCGGGGTGTCTTGCAGTGCACTTGCCTTGCTTCACCTCAGCTTGACTTTGTGTGAAATCATTTCCAAGATTAACATCATCTCAACCTCACCGCATGAATGCAAAGATCAGGTCACATATTTGGAGCACATTTGGTAGACTAATTGAAATTCATAAACCACAACATTCATACTACAAATGTCAAGGGAGCGAGTAAGGGCTTGTGTTTTATTATAGTAGTTTATTGTCAGGATTATGCAATTCACACAAACACATTTTGTAAAGTGAGTTTATTAGTGTGGGTTGAGAAAATAAAGGCTGAACCAGCATACATAAATACATCTTGGCAGGCTTTGTGAATCTTGCGCGTGTGGGTGTGTGTGTACTTAGCCCGCCTCGGCTCTCCCCACAACAGCAGATGAACAAACATGCCATGTTGTGTGGAGCTAGCACGGTTCGCTAAAGGGCAAGGTTCAGGATGTTCCGTTCTCAAGGCTGTTGTTGCAACGAGAGTCATAGAGTGTGAGAGAATGTACCCTGTGACTTGGCCTCTCCCTTTAGCGAGCCCAAACCTGTCTCTCCCTCCGTGCCTGTAGGTCATACAGGTACGAGGCCTGTTTGCTTTGCCAACCACAAAAAATTCAGGACATTTTGACTCCCAACACAGTGTAACTCAACCCTAAACCCCCACCTTCCCTTGTGAACATGCTTGTTTGATTAATAGGGGGGGTTTCCAAGTGTTTTGATACAGATCTAAACTGATTTACCCTCCTACATGCATACAATCATCAGTTTTTATTACTGAAGTTGTAATATATGTATATACATGCAGATTTTAAACTTTGTTCAAAAGTACTTTTTAGTTTATTTTTAACATCATTGCAGCTAAGCAGAATGTAGAAAGTTCAAAAATTCAACACAATATTTATAGTACAGTACAAATGGCAGTTTCTTAAGGCAATGTCTATGATAAATGTTACCCACCTTGATTTCGACCACACACTCACCTTGTTCATGGTGTTAGATCCAACTTGTTGCTAAACAAACGACAAACATTATGTTTTCTGTTGAAA
>TU16692
AGGGCTTGTGTTTTATTATAGTAGTTTATTGTCAGGATTATGCAATTCACACAAACACATTTTGTAAAGTGAGTTTATTAGTGTGGGTTGAGAAAATAAAGGCTGAACCAGCATACATAAATACATCTTGGCAGGCTTTGTGAATCTTGCGCGTGTGGGTGTGTGTGTACTTAGCCCGCCTCGGCTCTCCCCACAACAGCAGATGAACAAACATGCCATGTTGTGTGGAGCTAGCACGGTTCGCTAAAGGGCAAGGTGAGGTACGTTGCTTTACATAGATGTTTAGATATGCTGAACTTAAAAGCGTTCACTGCATAATAAGACAGCCGGGGTTTAACATTCACAGCGTTTGGCATACAACTTTCACGTCCCTCGTTAATCCGTGCAAGCTTGAAGCACATGGCAAATTATACTACAACTGAAAACCAGTCAAGCATGTTTTCTACAGCTACTATACATGTGTTTCACATCGTATCTGTGCTGTTATTTGTCAATACAGGCCTTCGAAGGTTGTGGAAGATGAGATCTTTCCATGTCTCCTACACTTCACACCACTGAAATCTGATTGGACAACTACACAGACTCCGGTGGAATGAAGGATAGAATTCACAGAGCAGATAAAATGGATTCCGCAGCACTTCCATACCTGTATGAAGTATGACACAACATAAGCACACTGTCAATAAATGAATTACACACCATACAAAACACTGTAAAAGTTCCATTTTAAAAATGTAAACTTAAAATTCTAAATCTAACTGATTATTTGTTGTGCAGGTTCAGGATGTTCCGTTCTCAAGGCTGTTGTTGCAACGAGAGTCATAGAGTGTGAGAGAATGTACCCTGTGACTTGGCCTCTCCCTTTAGCGAGCCCAAACCTGTCTCTCCCTCCGTGCCTGTAGGTCATACAGGTACGAGGCCTGTTTGCTTTGCCAACCACAAAAAATTCAGGACATTTTGACTCCCAACACAGTGTAACTCAACCCTAAACCCCCACCTTCCCTTGTGAACATGCTTGTTTGATTAATAGGGGGGGTTTCCAAGTGTTTTGATACAGATCTAAACTGATTTACCCTCCTACATGCATACAATCATCAGTTTTTATTACTGAAGTTGTAATATATGTATATACATGCAGATTTTAAACTTTGTTCAAAAGTACTTTTTAGTTTATTTTTAACATCATTGCAGCTAAGCAGAATGTAGAAAGTTCAAAAATTCAACACAATATTTATAGTACAGTACAAATGGCAGTTTCTTAAGGCAATGTCTATGATAAATGTTACCCACCTTGATTTCGACCACACACTCACCTTGTTCATGGTGTTAGATCCAACTTGTTGCTAAACAAACGACAAACATTATGTTTTCTGTTGAAAATAAAAAGGCCTAAACCTTTAGTGTGAAGGTCTTGAACGTTTTTAGTTGGTCCCAATGTGCGAGTGAGTCCCATCGCGATGAGCAGTAGTGTGATCCTCTTTCTCAGGTCTGTCTTTATTTGCCTACCTGCTTCAGGTAGCGCTGCTACAACAGCAGCCAGCGACCAATGGGAATTAGCCTTTTTTTGTAAACCGCACCCCTCCGTATCATAAATCTGAACCACACCTAGTGCCACTAACTTACTAAATTTAATGTTAATTTATAATACAATTTTTATTTTGATGCTTTAATTTACTGGATACTAATTTACTAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03865986_03866675.mRNA False 1274 mRNA 0.40 2 3865357 3867152
TU16692 True 1696 lncRNA 0.37 1 3865774 3867469

Neighbor

gene id symbol gene type direction distance location
CI01000001_03830254_03833027 NA coding upstream 32330 3830254 ~ 3833027 (+)
CI01000001_03821989_03823336 SLC48A1A coding upstream 41773 3821989 ~ 3823584 (+)
CI01000001_03719251_03775929 ITGA5 coding upstream 88932 3718190 ~ 3776425 (+)
CI01000001_03669438_03673748 CSRNP2 coding upstream 191570 3668725 ~ 3673787 (+)
CI01000001_03650790_03662852 LSF, TFCP2, TFCP2.L coding upstream 202413 3650636 ~ 3662944 (+)
CI01000001_03867875_03890850 NA coding downstream 688 3867840 ~ 3890989 (+)
CI01000001_03983212_04011240 NA coding downstream 115976 3983128 ~ 4011596 (+)
CI01000001_04085864_04225894 PLXNA2 coding downstream 218712 4085864 ~ 4225894 (+)
CI01000001_04296723_04300348 NA coding downstream 429449 4296601 ~ 4300975 (+)
CI01000001_04311013_04315588 NA coding downstream 443861 4311013 ~ 4315765 (+)
G14917 NA non-coding upstream 13309 3851831 ~ 3852048 (+)
G14912 NA non-coding upstream 20516 3844469 ~ 3844841 (+)
G14911 NA non-coding upstream 24003 3841143 ~ 3841354 (+)
G14874 NA non-coding upstream 169965 3636855 ~ 3695392 (+)
G14878 NA non-coding upstream 180889 3683322 ~ 3684468 (+)
G14931 NA non-coding downstream 11367 3878519 ~ 3878797 (+)
G15202 NA non-coding downstream 67420 3934572 ~ 3934835 (+)
G15208 NA non-coding downstream 71507 3938659 ~ 3939680 (+)
G15225 NA non-coding downstream 85220 3952372 ~ 3952917 (+)
G15239 NA non-coding downstream 109889 3977041 ~ 3977851 (+)
CI01000001_03618075_03620436 NA other upstream 243906 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2194353 1667762 ~ 1671167 (+)
G13051 NA other upstream 2820205 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3373300 483853 ~ 488825 (+)
G12614 NA other upstream 3554416 309144 ~ 310941 (+)
G15794 NA other downstream 1194066 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1419597 5279837 ~ 5287698 (+)
G15995 NA other downstream 1844733 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3665420 7531541 ~ 7540586 (+)
G17234 NA other downstream 4164972 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021817 dre-mir-205 non-coding NC_007134.7 CM002907.2 33290273 ~ 33290361 (+)
rainbow trout (Oncorhynchus mykiss) G1479977 LOC106565879 non-coding NC_048581.1 CM023235.2 68485990 ~ 68489612 (-)
eurasian perch (Perca fluviatilis) G48765 NA unknown NC_053116.1 CM020913.1 11314662 ~ 11315992 (+)