CI01000001_03669438_03673748 (CSRNP2)


Basic Information

Item Value
gene id CI01000001_03669438_03673748
gene name CSRNP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3668725 ~ 3673787 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03669438_03673748.mRNA
TTATAAAAATGAATATGCCCCAGCTGAGTCAGACTCATGTTATTTCCTTAGTGTTCATAATCATAAAATTAATAAAACTAATCCGGTTTTTATGGATTTCACAAATCTGTGGGGTTAAATCCATTATGCTGTGAGTTTAATTTTCAGTCATACTACTTAAGTTATCTTTCCCCCCCTTCGCATGGAAAAAACCGACCTTCCCTCAAAGCCACCGCCAATCTGTGCTCATTTAACCCAGTAAAAAGCCACTGACTGTTTAAAAATAGTGTTTAATCATGAAGAAAATCAGGCATGGAGCCGCTCAAAGCAGTTGTATTACACTGCTCCCTCGGGCTAAGGAGGTGGTCTGATCAAACGTCCCGACTCGGCCTTGTTTGACCTCTCTGGTTTGACTGAACTGGGACTTGTTTATCGGCTTGCAAAGGCTTGTTGTTTGTAAGGTTCCACCGGTTTTAATGGGGGTGAAAAAGACCCAAAACTTGGATGCAGTTTTTCCATGGCTATTGCTTTAAACCAGTTACCATGGTGATGTTTGCAGGCTTCATGATTTTTAAGCAGGACTTTCATACTGGATGGAGAAAGAGAATGTCAAGGATTTGGTAGCAAAAGAGGTGATATTGCATAAGCTTCCAGATTGTTTTATGTGGCCTTTTTTGGTTGATTTTTTTTTTTTTTCTTTTTTTTTAATTGAAAACAGGGAACAAGAGGTCATCATGGGTATCAAAATGTCAAAACGCAGTGTTTCCATGGAGACAGTGTCATCTCGCGGCCTGAAGCGCAGATTTGAGGAGGTGGACAGCGGCTCGCCGTGTTCCACACCCAAAGATTCAGATGATGACATCTCCAGCAGTGACAGCGCTGATAGCTGCGACAGTCTCAACGCTCCCTCCAGCTCTCTAACACCCCCCTCCATTCTCAGAAGGCACAAAGTGTCTTTAGGTCGTAAGCAGGTACGCTTTGACGCGGTGACGGTCTACTACTTCTCCAGAAGGCAGGGCTTCACCAGTGTGCCCAGTCAGGGTGGCAGCTCCCTGGGCATGGCTCGCCATCACTGCGCTATACGACATTACACCCTTGGCGAGTTTGCACGAGAACAAGAGAGCAGCCACAAGCATGTGCTGCGTCAACACCTACGCCAAGAAAAGCTCAATGCTCGCAAGTTAAAGCTGACACGGAATGGAACTGTAGATTGTCCCGAAGCGGAATTGCTTACCTTGGACGACATATCCGATGAGGATCTGGACGTTGAGAGCGTGGAGGTGGATGATTGCTTCTTCCTGCAGCCTCTTCCTACCAAGCGGCGCCGGGCACTACTGAGGGCCTCTGGTATTGCCCGTATAGATGCCAGAGAAAAGGCTGAGCTGCGTGCCATACGTTTGTCCCGGGAGGAGTGTGGTTGTGACTGCCGTTTCTACTGCGACCCTCGGCACTGTGGCTGCAGCCAGGCTGGAATTAAGTGCCAGGTGGATCGGATGTCCTTTCCATGTGGATGTACCCGTGATGGTTGTGGTAACACTGCCGGCCGCATTGAGTTCAACCCTCTTCGTGTGCGTACCCATTATCTCCACACTATCATGAAACTTGACCTGGAAAAGAGAAGCCTGTTGGGTGTTAGGTCTGGAGAGGACTGTGGGGAAGAGACAGAGTTAGTCTCCTCACCATCTATGTCTCTTTCTCCCTTGGACTCGGATGTGGAAGTGGAAAGCCAAAGAGTTCAGGAGCTGCAAGAGGAGCAGTGCGACAGCCTGGAGCGTGAGAACGAAACGGCCGTGCTTCACCTACAAAGTGCAGAGGAACGGGAAAGGAGACTGGAACAAGAGGAGCAGCAGGTCGAGGAAGAGCAGAACGCCGACCCAACCCTTTGCCTCCTGCAGGGTGCCCTGTCCAGCCAGGCTGGGATGGAGGGCATGGAAGGAGTTGAGGGAGTCCTTCTAGAGGGGCCTTTTCCTGAAGGTGCCACCCTGCTGTGTATTACAGAGAACCATCCAGATGAACAGACCCAGCAGAGGCTGCTCAAAGACCCTTCTTCTGTCCTCTACTATCAAGTAGGTCACGTAGAGACTGCGGCCTTTGAGACGCTCCCAGCACAAGTAGAGGAGGTGGTGAGTGAAGGTGATGATCCAGAGACGGAGAGCGATCGGCAAAAACAAGAAACCTGCGGGCAGGATTCGGCCAAGAGCTTGTCTGTCGAAGTACCTCCACCTTTCGAGAATGGTGGCGAAGAACATCTTTGTCCAGAACAGGCCTCAAATGAAGGGGAATGCCTCGAGACGTGCCTGGCACTGGATGAAAAAGCAGTACAACTTCCTCCAGAAGTGTAGAGCCCATCACCTCTGCAGATGTTTTGCACAAGTTAGTCA

Function

symbol description
csrnp2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human CSRNP2 (cysteine and serine rich nuclear protein 2).

GO: NA

KEGG:

id description
K17494 CSRNP; cysteine/serine-rich nuclear protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03669438_03673748.mRNA True 2360 mRNA 0.50 5 3668725 3673787

Neighbor

gene id symbol gene type direction distance location
CI01000001_03650790_03662852 LSF, TFCP2, TFCP2.L coding upstream 5781 3650636 ~ 3662944 (+)
CI01000001_03638240_03647295 POU6F1 coding upstream 21045 3638240 ~ 3647680 (+)
CI01000001_03618075_03620436 NA coding upstream 47293 3618075 ~ 3621451 (+)
CI01000001_03609191_03615121 NA coding upstream 53309 3609191 ~ 3615416 (+)
CI01000001_03593892_03602210 RACGAP1 coding upstream 66465 3593892 ~ 3602260 (+)
CI01000001_03719251_03775929 ITGA5 coding downstream 44403 3718190 ~ 3776425 (+)
CI01000001_03821989_03823336 SLC48A1A coding downstream 148202 3821989 ~ 3823584 (+)
CI01000001_03830254_03833027 NA coding downstream 156467 3830254 ~ 3833027 (+)
CI01000001_03865986_03866675 NA coding downstream 191570 3865357 ~ 3867469 (+)
CI01000001_03867875_03890850 NA coding downstream 194053 3867840 ~ 3890989 (+)
G14873 NA non-coding upstream 35142 3633093 ~ 3633583 (+)
G14842 NA non-coding upstream 44095 3621578 ~ 3624630 (+)
G14856 NA non-coding upstream 84683 3583116 ~ 3584042 (+)
G14836 NA non-coding upstream 118567 3548776 ~ 3550158 (+)
G14741 NA non-coding upstream 133502 3531198 ~ 3535223 (+)
G14878 NA non-coding downstream 9535 3683322 ~ 3684468 (+)
G14911 NA non-coding downstream 167356 3841143 ~ 3841354 (+)
G14912 NA non-coding downstream 170682 3844469 ~ 3844841 (+)
G14917 NA non-coding downstream 178044 3851831 ~ 3852048 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 1997721 1667762 ~ 1671167 (+)
G13051 NA other upstream 2623573 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3176668 483853 ~ 488825 (+)
G12614 NA other upstream 3357784 309144 ~ 310941 (+)
G15794 NA other downstream 1387431 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1612962 5279837 ~ 5287698 (+)
G15995 NA other downstream 2038098 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3858785 7531541 ~ 7540586 (+)
G17234 NA other downstream 4358337 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008712 NA coding CM030126.1 CM030126.1 9389411 ~ 9391756 (+)