CI01000001_03650790_03662852 (LSF, TFCP2, TFCP2.L)


Basic Information

Item Value
gene id CI01000001_03650790_03662852
gene name LSF, TFCP2, TFCP2.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3650636 ~ 3662944 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03650790_03662852.mRNA
CCATAAAATAAACCTTAATATATGATCCATCGAATCCATTTTTCCCCTCTGTTTCTTTAGACAGGCGTCTGTGATCATCCCTAGACCCATAGGGAGACTCTCAGGACTGTGATTCATTTGTTCCTAAGTTCACTTGAATTGGAGGTCTAAAGTCATGGCTTGGGCTCTGAAACTACCTCTGGCCGATGAGGTGATTGAGTCTGGCCTGGTCCAGGACTTTGATGCCAGTCTGTCAGGGATCGGGCAAGAACTTGGAGCTGGTGCATACAGCATGAGTGATGTGCTAGCTCTCCCCATCTTTAAGCAGGAGGAGTCAAATTTACCTCCAGAAAGCGACAATAAGATCCTTCCCTTCCAGTACGTACTGTGTGCCGCCACCTCTCCTGCTGTCAAACTACATGATGAGACACTTACCTACCTCAATCAAGGACAGTCTTATGAGATTCGAATGCTGGACAATCGGAAAATGGGAGAGCTTCCTGAGATCAATGGGAAAATGGTGAAGAGCATTATCCGTGTCGTGTTTCACGACCGCCGGCTTCAGTACACTGAACACCAGCAGCTGGAGGGCTGGCGCTGGAACAGACCGGGAGACAGAATCCTTGATTTAGATATCCCAATGTCGGTAGGGGTGGTTGATCCCAGGGCAAACCCTACACAGCTCAACACTGTGGAGTTCCTCTGGGACCCTTCGAAAAGGACCTCTGTGTTTATTCAGGTTCATTGTATAAGCACAGAGTTCACCATGCGTAAGCATGGAGGAGAGAAGGGAGTGCCGTTTCGTGTTCAAATCGACACTTTCAAGGAGAACGAGGCTGGGGAGTACACTGAACACCTGCACTCCGCCAGCTGCCAAATCAAAGTTTTTAAGCCTAAAGGTGCAGACAGAAAGCAGAAAACAGACAGAGAAAAAATGGAGAAGCGAGCACCGCAGGAAAAGGAGAAATACCAGCCTTCATATGAAACCACCATTCTCACTGAGTGCTCTCCATGGCCTGAGGCTACATATGTCAACAACTCCCCATCACCAGGTTTCAACAGCTCCCACAACAGCTTTCCTGTGAATGAAGGAAATGGTTCACCCAATCACCAGCCGGAGCCTGTCGTACAGTTAGCAGATTTGTCGTGCCACCTACTTACAAGAGACAGTGAAAGCAATCAGAATCTGTTGCCCACGGCAACGCCACAGGAAGCACAGCAGTGGCTCCATAGAAACCGTTTTTCACCATTCTGCCGTCTCTTCTCAAACTTCTCGGGTGCTGATCTGCTAAAACTGACCCGAGAGGATGTCATCCAGATCTGTGGACCTGCTGATGGCATTAGACTATTTAACGCACTTAAAGGACGGGTGGTCCGTCCAAGGCTCACCATCTATGTGTGCCAGGAGTCCCAACAGGCTCGTGAACAGCACCAGAAACATGAGAATGGAGACGGGACTAGCAACACTTTTTTCGTGTATCATGCTATCTATCTGGAGGAGTTAACAGCTGTGGAACTGACGGAAAAGTTGGCTCAGCTCTTCAGCATCTCTCCACGGCAGATCAGTCAGATCTTCAAGCAGGGACCCACTGGTATCCATGTGTTAGTCAGTGATGAGATGATTCAGAACTTTCAAGATGAGATGTGTTTTGTCCTGGACACAATGAAAGATTCAACCCTCAGCCCATTCCCTGCACACTTCCTGGACCTTACTGAAGATCGCTTTGCTCGGAATAGTAATGGAGACGATCACGGGAAAGGGGAAAAAAGGCACCTGACCCATTTTGAAACCTTTAATGTTGTTGTCTATGGAGTGCGTGCTGCCTTTTTCAACCTCTTCCCATTTACACAAAATGAAATTTCACAAAAAAACAAATCATAGAATTTCTATTTTACTATCTTTCTTTGCATCAATTTACTTTGTTGCTCTTTTAAAAGGCAGAAAAAATAGGTTTTGTCTCATGTAATTATGTA

Function

symbol description
tfcp2 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TFCP2 (transcription factor CP2).

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03650790_03662852.mRNA True 1953 mRNA 0.47 16 3650636 3662944

Neighbor

gene id symbol gene type direction distance location
CI01000001_03638240_03647295 POU6F1 coding upstream 2956 3638240 ~ 3647680 (+)
CI01000001_03618075_03620436 NA coding upstream 29204 3618075 ~ 3621451 (+)
CI01000001_03609191_03615121 NA coding upstream 35220 3609191 ~ 3615416 (+)
CI01000001_03593892_03602210 RACGAP1 coding upstream 48376 3593892 ~ 3602260 (+)
CI01000001_03506220_03510588 COQ10A coding upstream 139976 3506220 ~ 3510660 (+)
CI01000001_03669438_03673748 CSRNP2 coding downstream 5781 3668725 ~ 3673787 (+)
CI01000001_03719251_03775929 ITGA5 coding downstream 55246 3718190 ~ 3776425 (+)
CI01000001_03821989_03823336 SLC48A1A coding downstream 159045 3821989 ~ 3823584 (+)
CI01000001_03830254_03833027 NA coding downstream 167310 3830254 ~ 3833027 (+)
CI01000001_03865986_03866675 NA coding downstream 202413 3865357 ~ 3867469 (+)
G14873 NA non-coding upstream 17053 3633093 ~ 3633583 (+)
G14842 NA non-coding upstream 26006 3621578 ~ 3624630 (+)
G14856 NA non-coding upstream 66594 3583116 ~ 3584042 (+)
G14836 NA non-coding upstream 100478 3548776 ~ 3550158 (+)
G14741 NA non-coding upstream 115413 3531198 ~ 3535223 (+)
G14878 NA non-coding downstream 20378 3683322 ~ 3684468 (+)
G14911 NA non-coding downstream 178199 3841143 ~ 3841354 (+)
G14912 NA non-coding downstream 181525 3844469 ~ 3844841 (+)
G14917 NA non-coding downstream 188887 3851831 ~ 3852048 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 1979632 1667762 ~ 1671167 (+)
G13051 NA other upstream 2605484 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3158579 483853 ~ 488825 (+)
G12614 NA other upstream 3339695 309144 ~ 310941 (+)
G15794 NA other downstream 1398274 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1623805 5279837 ~ 5287698 (+)
G15995 NA other downstream 2048941 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3869628 7531541 ~ 7540586 (+)
G17234 NA other downstream 4369180 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location