CI01000001_03638240_03647295 (POU6F1)


Basic Information

Item Value
gene id CI01000001_03638240_03647295
gene name POU6F1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3638240 ~ 3647680 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03638240_03647295.mRNA
ATGGACACCGAGGATCTCCCTGCAAACAATGCGCCACTCACTGTCAATGAACAGCACAAGCAATTCTCTTCTGGTGGTGAGGCATTTGCAGAAAGCATTGCTTATGCTAGTTTTTGGGCAGACGCTCTTGTTTGTTTGCTGTACTCATGTCACTTGTGTCCTTGTTGGGTTGGTTGGTTGTGTCCTAATGTGTGCTTGGCATCTCTGTTCTCTTTAGCCATTCACTCTCTGACTGCAGAAGTGTTTTCTCAGCTTTTAGGTTCCTGCACTTTGAAATTCCCAGCACAAGACGACCAGGTCATCGTCATGTCAGGTCAGGAGACCATCCGAGTGTTGGAGGTGGAGGTGGATACAGCCTTGTCTTCTTCAGGGGCTGATGGGAAGTTGGAGTCAGGGGGCGAGGAGGGCGCTGGTCAGACCCTGGATGCCGCTGAGGAGGGTCAGTTGGACAGTCCAGTAACCACAAGCGCTACTACAGCTGTGTCTGTGGAGGTCTCAGCACCTGCGGTCCAGACCGTGGTCTCCACAGCCCCCATCAGTGTGTCTCCAGCCCAGCCACAGACCAGCGTACCCATCACTGTCCAGGCCTGCCCACAGGTCCTGACTCAGGATAGTTTGGCCTCTCTGATGACTGGCATGCTTGCCCAGCAGGGTTCTCTGGGTCAGCCCCTGCTCATTCCTTTGAGTATGGCCGGGTCTGTGGGTGGTCAGGGTGGTCTGGCAGTGCTCACCTTACCCACCGCCACTGTCGCCACCATCCCTGGTCTCACGGCAGTCAGCCCTGCCGGAGGACTGCTGAAGCTGCCGTTTGCAGGACTGCAAGCTGCTACTGTGTTGAACTCCGTCCAGACGCAGCTGCAGTCACCTGCGCAGGCGGTCCTGCAGCCCCAGGTGTCTGCTCTGCAGTCCGTGCAAGCGGCTCTGCAGCCAACGCAGACCACGCCAGCCACCACCGCGTCTGTTGTACAAAAGGTGTCAGAGCCTAGTGCCTCTGTCGCAACACTTCAGACTGCAGGCCTGTCCATCAACCCTGCTATTATTAGCGCAGCCTCTCTGGGAGCTCAGCCTCAGTTCATCAGCTCTCTTACTACAACTCCCATCTTCACCAGCGCCATGTCTAATGTGGCAGGACTCACAAGTCAACTCATTACCAACGCACAGGGTCAGGTGATTGGAACACTTCCTCTGCTGGTCAACCCTGCATCACTGGCTGGAGCTGCGGCAGCCTCTGCGTTACCCGCTCAAGGCCTGCAGGTCCAGACTGTGTCCCCACAGCTGATCTTGAACTCCCAGGGCCAGATCATTGCTACAATAGGGAACGGTCCAACAGCAGCTGCCCCATCCGCCGCCTCTGTCCTCCCCAAAGCCACCGTGCCCCTGACGCTCACCAAAACCACCACACAGGGTCCTGTTGGGAAAGTGGCCCCATCCAAAGTGATCATTGCTCCCCAGCCACAAGTGGTTAAATCAGTCACACCCCTCACCTCTACTGGTGCCATTGCCTGTGGAGACATGCCTACGGTGGGGCAGCTTGTCAGCAAGCCACAGTCTGCTGTGAATGAAGAAGAGGCCATTAATCTGGAGGAGATCCGGGAGTTTGCCAAGAATTTCAAGATTCGACGGCTCTCTCTGGGGTTGACACAGACTCAAGTGGGCCAGGCTCTCACTGCTACAGAGGGTCCAGCATACAGTCAGTCAGCCATCTGCAGATTTGAGAAGCTTGACATCACTCCTAAAAGTGCCCAGAAGCTGAAACCCGTGCTGGAGCGCTGGCTGGCCGAGGCTGAGCTCTGGAATCAGAAAGGTCAGCAGAACTTGATGGAGTTTGTGGGCGGAGAACCCTCCAAGAAGCGTAAACGGAGAACGAGCTTCACGCCGCAGGCCATCGAGGTCCTCAACACTTACTTTGAGAAAAACTCTCTTCCGACTGGCCAAGAGATTACAGAGATCGCAAAGGAGCTGAATTATGACCGAGAGGTGGTTCGGGTCTGGTTTTGTAACCGTCGACAGACTCTGAAAAATACAAGCAAGATCAACGTGTTTCAGGCCCAGTAGGACGATGGCGTGTCTCTTACAGTGCAACAGAAGAACTTTTTGGACATTGATGTATTGGTGCTAGTTGCAAAATGACTGAAATAACTGATTTGCTGTTGTGATGAAGCCAGCGGCACTCGAATTGTGTGCGGTCTTAGAATAGTATCTTTTTGTTGTTTTTTTTGGTTTCCGTTATACTGCATGCAGAGTGACTTTTTGCCATGCCACCACAATTTTCAATGCTAAAATGGCTTTTGAACTATTTAAAATACGGAAGAAGCTACGAAATCCTGTAGTTGCTGTTTTTATAGACGGAAATAAGCACTTCATTAATATATAATAGAGAAAACTTGCAATTATGCTCTCTCATTTAGTTTTTTTTGCAGAAACTAACTATTCTTGGCCA

Function

symbol description
pou6f1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within atrioventricular canal morphogenesis. Predicted to be located in nucleus. Is expressed in atrioventricular canal; atrium; cardiac ventricle; and central nervous system. Orthologous to human POU6F1 (POU class 6 homeobox 1).

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09368 POU6F; POU domain transcription factor, class 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03638240_03647295.mRNA True 2440 mRNA 0.52 11 3638240 3647680

Neighbor

gene id symbol gene type direction distance location
CI01000001_03618075_03620436 NA coding upstream 16808 3618075 ~ 3621451 (+)
CI01000001_03609191_03615121 NA coding upstream 22824 3609191 ~ 3615416 (+)
CI01000001_03593892_03602210 RACGAP1 coding upstream 35980 3593892 ~ 3602260 (+)
CI01000001_03506220_03510588 COQ10A coding upstream 127580 3506220 ~ 3510660 (+)
CI01000001_03482362_03485979 TMED4.S, TMED4 coding upstream 150987 3482362 ~ 3487253 (+)
CI01000001_03650790_03662852 LSF, TFCP2, TFCP2.L coding downstream 2956 3650636 ~ 3662944 (+)
CI01000001_03669438_03673748 CSRNP2 coding downstream 21045 3668725 ~ 3673787 (+)
CI01000001_03719251_03775929 ITGA5 coding downstream 70510 3718190 ~ 3776425 (+)
CI01000001_03821989_03823336 SLC48A1A coding downstream 174309 3821989 ~ 3823584 (+)
CI01000001_03830254_03833027 NA coding downstream 182574 3830254 ~ 3833027 (+)
G14873 NA non-coding upstream 4657 3633093 ~ 3633583 (+)
G14842 NA non-coding upstream 13610 3621578 ~ 3624630 (+)
G14856 NA non-coding upstream 54198 3583116 ~ 3584042 (+)
G14836 NA non-coding upstream 88082 3548776 ~ 3550158 (+)
G14741 NA non-coding upstream 103017 3531198 ~ 3535223 (+)
G14878 NA non-coding downstream 35642 3683322 ~ 3684468 (+)
G14911 NA non-coding downstream 193463 3841143 ~ 3841354 (+)
G14912 NA non-coding downstream 196789 3844469 ~ 3844841 (+)
G14917 NA non-coding downstream 204151 3851831 ~ 3852048 (+)
CI01000001_03865986_03866675 NA non-coding downstream 218094 3865357 ~ 3867469 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 1967236 1667762 ~ 1671167 (+)
G13051 NA other upstream 2593088 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3146183 483853 ~ 488825 (+)
G12614 NA other upstream 3327299 309144 ~ 310941 (+)
G15794 NA other downstream 1413538 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1639069 5279837 ~ 5287698 (+)
G15995 NA other downstream 2064205 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3884892 7531541 ~ 7540586 (+)
G17234 NA other downstream 4384444 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location