CI01000001_03482362_03485979 (TMED4.S, TMED4)


Basic Information

Item Value
gene id CI01000001_03482362_03485979
gene name TMED4.S, TMED4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3482362 ~ 3487253 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03482362_03485979.mRNA
ATGAAGGCGGTGGTGTCCTGTGCCGGGCTTTTGCTTCTATTTGCGTGGCTTTCTCCAAGCCAAGCCCTTTATTTCCACATCGGAGAGACGGAGAAGAAATGTTTTATAGAAGAAATACCCGATGAAACCATGGTGATCGGAAGATACAAAACACAGCTGTGGGACAAACAGGCTGGCTCTTTCCTCCCGTCCACCCCTGGTTTAGGCATGCATGTGGAAATCAAAGATCCTGATGCCAAGATCATTCTGTCCCGTCAGTATGGATCAGATGGACGTTTCACCTTCACGTCCCACACCCCAGGCGAGCATCAGATCTGCCTCCACTCCAACTCCACCAAGATGGCACTGTTTGCTGGTGGAAAACTGAGAGTCCACTTGGAGATTCAGGTTGGTGAACACACCAACAACTACCCTGAAATCGCAGCTAAAGACAAACTGACCGAGCTGCAGCTGAGGGTCCGACAGCTCCTGGACCAGGTGGAACAGATCCAGAAAGAGCAAAACTACCAGCGGTACCGTGAGGAGCGTTTCCGTATGACGAGCGAGAGCACGAACCAGCGCGTTCTGTGGTGGTCTATCGCTCAGACCATCATCCTCATCATCACTGGTATCTGGCAAATGAGACATCTCAAGAGCTTCTTCGAGGCCAAAAAGCTGGTGTGAAAATCAGAAAGCATTACAAAGACAATAACCCAAGTAACATTTATTGCCATTTTGTATCTCAAGCATGGAAATACTCAGTGCTTTATTTCAATATTTTGTTTTTAAATTCAGTTTGTTTCAACATTATCTTCAGCAGATACATTTAGACACAATGAGCTTTGAATGAAGTCTTAAACACGCAGAATATTAACCACCCTTAATTCTGCTCTATACCTGATACTCATTTATCAGAAATTAATCAATCATAAATGTCTAGAATGTTGTTCAAGAGTTCATATTACTAAAAAGTGTGATATGAAAATGTTATGCTTTTAAAGTGATAATCATTATGGGTGCATGGAAACTACTGTTGACTTTAAGGTCGCATTACTGATACATGTGAAGAATTAAGCCAGCTAATCATTTAAGCATTTTTAATATGTATATATTGAGGTATATTGAAGATTTGTGGCTTTGTTTTAATGTTCTGTCTGTCTTGGGCTCTAAACACCCTCAAATTGGTTTGATGTTCATGATCTTGAGGGGAAATGATTCAAGCAAATTGATTGTAGCTTGCATAGTAGCTGTTTAGACCAAAAAGTAAATCCATATTTTAGGGATTTTCTTTCTTTTAGTGATTTACAAAATGTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCTCAGTGTTCTGTTTCATGCTTTATTTATTCACTGCATTGACCAGATTTAAAATATAATTCCAATAGAAACAATGAGCAGGAATGTCTGTAATTTAATGAAAACTTTTGGTTTTCTGGGTTCTTTTTCAATTTCAATACTATATGTTGTTTATAGGATTTTTGGAAATTTTTGTACTGGCTTCTTACAAGTACCAATTTATAAAAATGCTGGTTTGCATGACACACAATGGCAAAATCCTCCATGTAATGTGAAAAGTTGAAGGTTATTTATTGGTTAACGCAGCTCTGTATTCTCAAGTGTCATTCAAGCTTTGTA

Function

symbol description
tmed4 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED4 (transmembrane p24 trafficking protein 4).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K20346 TMED4_9_11; p24 family protein alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03482362_03485979.mRNA True 1937 mRNA 0.33 5 3482362 3487253

Neighbor

gene id symbol gene type direction distance location
CI01000001_03306094_03325686 NA coding upstream 154813 3305894 ~ 3327549 (+)
CI01000001_03200059_03206898 NA coding upstream 275366 3199969 ~ 3206996 (+)
CI01000001_03061892_03081206 NA coding upstream 401153 3060940 ~ 3081209 (+)
CI01000001_02838290_02859249 NA coding upstream 622668 2838290 ~ 2859694 (+)
CI01000001_02787356_02792545 KLF15 coding upstream 689111 2785324 ~ 2793251 (+)
CI01000001_03506220_03510588 COQ10A coding downstream 18967 3506220 ~ 3510660 (+)
CI01000001_03593892_03602210 RACGAP1 coding downstream 106639 3593892 ~ 3602260 (+)
CI01000001_03609191_03615121 NA coding downstream 121938 3609191 ~ 3615416 (+)
CI01000001_03618075_03620436 NA coding downstream 130822 3618075 ~ 3621451 (+)
CI01000001_03638240_03647295 POU6F1 coding downstream 150987 3638240 ~ 3647680 (+)
G14743 NA non-coding upstream 2505 3476585 ~ 3479857 (+)
G14731 NA non-coding upstream 25459 3428794 ~ 3456903 (+)
G14777 NA non-coding upstream 106699 3375412 ~ 3375663 (+)
G14775 NA non-coding upstream 107354 3374675 ~ 3375008 (+)
G14770 NA non-coding upstream 112475 3369684 ~ 3369887 (+)
G14733 NA non-coding downstream 29547 3516800 ~ 3530710 (+)
G14741 NA non-coding downstream 43945 3531198 ~ 3535223 (+)
G14836 NA non-coding downstream 61523 3548776 ~ 3550158 (+)
G14856 NA non-coding downstream 95863 3583116 ~ 3584042 (+)
G14842 NA non-coding downstream 134325 3621578 ~ 3624630 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 1811358 1667762 ~ 1671167 (+)
G13051 NA other upstream 2437210 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 2990305 483853 ~ 488825 (+)
G12614 NA other upstream 3171421 309144 ~ 310941 (+)
G15794 NA other downstream 1573965 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1799496 5279837 ~ 5287698 (+)
G15995 NA other downstream 2224632 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 4045319 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location