CI01000001_02787356_02792545 (KLF15)


Basic Information

Item Value
gene id CI01000001_02787356_02792545
gene name KLF15
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2785324 ~ 2793251 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02787356_02792545.mRNA
CTATATAAAGATAGAGAAAGCGAGGGCTGGGTAAACCATATTATAACCTATATTAAATATTTATGTAATAGCTTATTACATAAAACGTTGCATATTTCGAACTTTATTGTACGGTGCACATTTGTTTTGTAGTTATAAATAATCACTTATGTGCAAGTAATTTTGCATGTGTAGTAATGTAGTGCATAATTATTAATAAGTACACTTCCGAAACATGAATGCTTCACTTAAATCATCTCACTAAGATTTTTAAGTATAACCAAAGTTAATACCTGGAGTACGTTCAATGCATATTTTGACCACTATGACTTTTTTACTGAGGAAAATCAAGTTCTGAAAAAACGGAAAACTTTTTATTATAAATTACTGACATGATTGTGGCAAGTAAAATAGATGGAAACACGTGATGCCTAACGTGAAGTAATTAACGGGATATTTAAAGTGATTTTAAAGTGTCTAAGGGTATTTGAAAAATAATGTCTCCTCCTGAGTTTGCAGTGGACACATGTGGGTGTTGACACTGCCTGTAGATGTCAGGGTTATTCTCGGTCATTCTGCAGCAGACAGGGGGCGCTAGAATCACCAACGCGATTAATCACCAATTAAAGTTTGCAGTACTGATTAATGAGCTACTTCAGCAACCTGTGGCGAAGTGTAATGACAGATCTATAGACCTTTAGTGTATGTTTTAAGGATGAGATAGACTTTTATGTTTGCTTATAGAAAGATTGGGTCTTGTTGTCAATCATTACCATGAGTGTACATTACCATTTACATTTTTGCTGTTTCATGAGTTGTTTTATGTTTCATAATTGTTTTAGCATTTACATTTGGTAAATACTTAATACTTCTTATTATGACAGTATGTGTCAAATCTCTTTTGGAGTGGTCATTGCATTGCTGTAGCTACAGATTTTCTTTCTTTTTTTCTTTTTATTTCAGTGCATGGGCCAAGGAATGCTATAATGAAATTACTAGCTTCAGTATTGAAGTTAGGCTTTGGTGGTCAAATTCCCAGAAATGAACAATGTTGCTTTCTTGAATGTCTTACATTCTGTTGATATGCTGATAGCAGCACTACAGTTGGTCTTTTATGCTAACAAGAAAGACACCTCAGAGTGAAAACCAAACATATTTTATGTATCAAGTAGAACACAGAAAAAAAGACAAAAGTCTAAGCTATTGAACATAGTTTATTGATTAAACAGGGTTGTCTCACACATAACAGGATCATTTTATGTGCTTGGTTTCCAATTATCATCTGCTTCAAATCAAGCACAATAATCTGAGACTCTTTGTGTGCACACAATGCTATCTTGTCTAAATGGGGTTAGCTTATAGCAAGCTTATTTTAGCTTTGATGTATACAGCTAAATTGTTTCCAGTGTCACACATCCACAAGGCTGGAGTTGATGGTAGCTTAGCCATTAGCTGCTACTTGGCTGTTTTCTAAAATATTCTTGTGAAGTGAAACAGAGTCATTGAATCATAATTTGGCCTAGCATCGAGTATGTTTAGATGCACTTTTGGAACCTGACTACAGCTGGTTTTTGCAAAGTCATTGAATATTTGAAGGATTAAACGCACATTGCACATCACCTCTATCTTTCGGAGTGTGTGTAAAATGCCAATGCTAATCGTAGTCTGATTAACGCATGTGTACAGTACATGTTGAATGACATCAAGCTATCTAGATCTGTTCAGGCATACTTCGCAAAAACTGGACTGGTATGAATTCAGTCGGATTAAATTATTACAAATTATTGTTTTAGTCTGACTGAAATTTAACTTGAAAGTGCATGTAAACATACTGACTAAGATCAGAAATCTGGTCTCAAAGTTGCTTCAGTTGGACATCCATTAAAACTGTTGTATAGTAAATCGTTTTGAATGTTATCCATCTACAAAATGTCAAATTATCGCTAATCTCAAATTTGTTTCTTGTTTTTTTATAGACAGAGAAAGGCCGGAATCATTAATAGCAGGGAACTGTACAAGTGGCCGCCGTGCTACGGACAGGCAGTAGCCAGGAATGGTGGATCACTTGCTGCTTGATGCAGAGACTTTCTTTCCTTACACTTTTTTGCTGCCAGCCCACAACCCATCGGATATGGTGACAGACGAGGGGGTGTACCATATGCTTCCATCTCCATTCTCAGAGGATAACCTGAGTGACTCATCTAGCCCACGTTCCTGTTCCAGCCCTGAGTCTCAGGTGTTGGGCTCTAGTTGTGGGAGTAACTCAAGTGGAGAAAGCCAAGATGGCCTCCTTGACTTCCTTCACTCTCAGTCCCTGACTTTGAGCCAAAACTCACTCTCTTCTACCACGGTATCTGCCATGGTCCCTCCTGTCCTTCCCATGGGTCTGGCTTGGGAGTCACGACGGGACCGCACCACCAAAGAGGAGTGCTTCGAGTTCCCTGTTTTCCCTGGAGATTTGGAGGACCATGCGGGGCTACTGTTTCAGCCCACTCTGGAGGAGATCGAAGAGTTCCTGGAGGAGAACATGGAAGTGGTGGCCTTGAAGGAGGAAGCCGGTGAGGGTCTAGTCACCTGTACGAGCATCCAAGGAGCTGCATCAGAACCTTGGGCTCAAAGCTCAGACCAAACAGTGCCTGTTTCAAGTGACATAGTCAATGCCATTTCTGATCCAAAAAGTGGACAATCCACAGTAGGGGCCTCCACAAGTCCTCAAAGCTCGCTGAAAAAGGAGGACTCTTCTGGGAAGGTTGTGGTGGTGGAGAATCCTAGCATGCCTGTGATACTACAGCTCCAGCCCATTCAAGTGAAACAGGAATTGAGCCCTAAAACAGCCCCCTCGCCACCAACACCACAACCTGCCTCGGACATCAAAATAACCCAGCTCCTTGTCAACATCCAGGGTCAAACTTTTGCCCTGGTACCTCAGGTGATCCCACAAGCCAGCCTTAACAGCTCTTCCTCCAAGTTTGTTCGTATTGCCCCGGTTCCCATTGCCGCTAAGCCTTTAGGTCTTGGGGAGAATGGAACAGGTGACGGCCAGGGCACAGGACTTGTAGTTGGGGGTCACAAATTCCAAAAGAGCTCAGTAGCTGATCTTATAAAAATGCACAAGTGTACTTTTCCTGGCTGTGCCAAGATGTACACCAAGAGCAGCCACCTGAAGGCACACCTGAGGAGACACACAGGCGAGAAACCATTTGCCTGCACTTGGCCTGGCTGTGGCTGGAGATTCTCCCGGTCGGACGAGCTGTCACGGCATCGTCGGTCTCACTCTGGAGTTAAGCCCTACCAGTGCCCCGTCTGCGAGAAGAAATTTGCCCGCAGCGATCACCTGTCCAAACACATCAAAGTCCATCGCTTTCCACGAAGCAGCAGGACAGCGCGCACTGCACACTGACCCCACACAACCCCCCACCATGGAGAGAGATAGAGATAGAAACGGACGAACAAAAGAAAGAGAGAGAGAAGGACAGAATAATTTGTGGTACTGTGATAATTTATTACGTGAGGCTCGGATGAACTGAAGAAGAGTTTGTTCTGAAACTGTTACTTGACTTGTCGGCCTCACAGATATTGTAAGCTTGTAGATTGTATTTTTGTAGTGTTCATGATTGTTTTCTATGTTCCAAGAACAAGTTTTTTTGCAACATGTAAAGTTCAAAGTATTTTTTTTGTTGTACTTTGAGGTGTGAATTGTTGATGTATCTGCCAGTCATCAACATTCCTTGTTCAATATCATGATAAAGTCACTTCTTTTTGCCAACGCAACGTGTTTAGCTCCTCTAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGGGTTCATTTGAACTACTGATCGGTAGGACTGTGCCATTATAAGCTATTGGCAAACATGGAGGCTTTTCCTCTTGACTTTCAGTTGTATACTGTGAAACGCCTCTCGGACAGACCATAGAGCAAATCAATGGAAGTCAAAACACGCACATTTGTCGTATGTGAATTGGCCTTTTGATCAGTATTGAATTTTTTTCCCTGATGTTGTTAATACATAACTTTTCTTCATTTCATTCTTCATTCTTGTCATTTCATTGGTTGCTTTCA

Function

symbol description
klf15 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in several structures, including alar plate midbrain region; epidermal cell; epidermis; median fin fold; and midbrain. Orthologous to human KLF15 (Kruppel like factor 15).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K09210 KLF15; krueppel-like factor 15

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02787356_02792545.mRNA True 4085 mRNA 0.41 2 2785324 2793251

Neighbor

gene id symbol gene type direction distance location
CI01000001_02755511_02767404 CPNE9, CPNE5 coding upstream 17599 2754993 ~ 2767725 (+)
CI01000001_02740511_02753173 NA coding upstream 31744 2740511 ~ 2753580 (+)
CI01000001_02708472_02723568 CMTR1 coding upstream 61315 2708472 ~ 2724009 (+)
CI01000001_02666739_02671962 FBXO25 coding upstream 112916 2666469 ~ 2672408 (+)
CI01000001_02657735_02658754 NA coding upstream 124723 2657447 ~ 2660601 (+)
CI01000001_02838290_02859249 NA coding downstream 45039 2838290 ~ 2859694 (+)
CI01000001_03061892_03081206 NA coding downstream 267689 3060940 ~ 3081209 (+)
CI01000001_03200059_03206898 NA coding downstream 406718 3199969 ~ 3206996 (+)
CI01000001_03306094_03325686 NA coding downstream 512643 3305894 ~ 3327549 (+)
CI01000001_03482362_03485979 TMED4.S, TMED4 coding downstream 689111 3482362 ~ 3487253 (+)
G13973 NA non-coding upstream 207510 2577519 ~ 2577814 (+)
G13971 NA non-coding upstream 220017 2564734 ~ 2565307 (+)
G13869 NA non-coding upstream 345232 2425601 ~ 2440092 (+)
G13924 NA non-coding upstream 404184 2380892 ~ 2381140 (+)
G13922 NA non-coding upstream 417113 2367979 ~ 2368211 (+)
G14555 NA non-coding downstream 179608 2972859 ~ 2973084 (+)
G14597 NA non-coding downstream 284939 3078190 ~ 3078503 (+)
G14752 NA non-coding downstream 522902 3316153 ~ 3316434 (+)
G14753 NA non-coding downstream 523970 3317221 ~ 3317458 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 1114320 1667762 ~ 1671167 (+)
G13051 NA other upstream 1740172 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 2293267 483853 ~ 488825 (+)
G12614 NA other upstream 2474383 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 822997 3618075 ~ 3621451 (+)
G15794 NA other downstream 2267967 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 2493498 5279837 ~ 5287698 (+)
G15995 NA other downstream 2918634 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 4739321 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022517 klf15 coding NC_007134.7 CM002907.2 35187683 ~ 35195908 (-)