CI01000001_02755511_02767404 (CPNE9, CPNE5)


Basic Information

Item Value
gene id CI01000001_02755511_02767404
gene name CPNE9, CPNE5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2754993 ~ 2767725 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02755511_02767404.mRNA
TTTTAAAAGGCAGATGAGCTGTCTGTCCGGTGTGTCACCCAGACCGTAGTTCCTCGAGTGCTCCCTAGACATTCTCTCTCTATCAAGATCCAATTAAATCTGTTGCATGTGTGACTTCCCTCCTGGTCTTGAGGGTCTCCCCAGAGATCTGGTATTCTGAAGAGAACAGCTCCAATAAATAGCTAAACACTGGAGACCTCCGCTCAACATTAATATGTATGAACCAATTGCTGTTCTCCTCTAACACGAGTGTGTCCTCTCTGTGGAATTGATTTCTTGTCCTAGTATTTTGCCTTTGTTGTGTCCTGAACTCCTGCTCCAGAGAGATGTTAACTGAGGCCAGCGATTAAAATGCATTGTTGGATATAATAGTGCCGGTATTGAAGACTCGGAGTCAGGAGTGCATCTGCTTTGTTTGCTTGTTTGTGCACCTTGTTTGTTTTTTAGTAGCTCTAAGAATATTCTATTCCCATATATCCCAAAGTAATCAAAGTGTTTTATAACAGGACATTGCAACCATGCAACTCTGTGCTAACAAGTTGGATAAAAAGGATTTCTTCGGGAAGTCTGATCCCTTCCTGGTGTTTTACCGCAGCAATGAAGACGGCACGTTCACTATCTGTCACAAAACAGAGGTGATAAAGAATACTTTGAACCCTGTGTGGCAGCCCTTCACCATCCCAGTGCGAGCTCTCTGTAATGGAGACTATGACAGAACAGTGAAGATTGATGTTTATGACTGGGACAGAGATGGAAGTCATGACTTCATCGGTGAGTTTACGACCAGCTATAGAGAGCTGTCTCGTGGACAGAGCCAATTCAATGTTTATGAGGTTCTGAATCCTAAGAAGAAAGGCAGGAAAAAGAAATACGTCAACTCTGGCACGGTAACACTTTTGTCCTTCAAAGTGGAATCGGAGTACACATTTGTGGACTTCATTCGGGGCGGAACCCAGCTGAACTTCACTGTAGCAATAGACTTCACCGCGTCTAACGGAAACCCATCACAGCCGACATCGCTCCACTACATGAACCCGTATCAGCTGAACGCGTACGCCATGGCCCTTAAAGCCGTGGGGGAAATCGTCCAGGATTATGACAGTGACAAACTCTTCCCTGCCTACGGCTTTGGAGCTAAACTCCCTCCTGATGGCAAGATCTCTCATGCTTTTCCCCTGAACTCTGACTGTGAGAATGCAAACTGCGTCGGCATCGAAGGCGTGCTGGAGGCGTACTATGACTGTCTTCGTAAAGTGCAGCTCTACGGCCCCACCAACTTTGCCCCTGTCATCAACCAGGTGGCACAGTGCGCGGCAGAGGTGACAGATGGCTCTCAGTACTTTGTGTTGCTGATCATCACAGACGGTGTCATTTCCGACATGGTGCAGACTAGAGAAGCTGTGGTCACCGCGGCATCCCTTCCCATGTCAATCATAATTGTGGGAGTCGGCCCTGCTGAATTTGATGCTATGGAAGAGTTGGATGGAGATGAGGTCAGGGTGTCCTCCAGGGGACGTGTTGCTGAGAGAGACATTGTCCAGTTTGTACCGTTCCGAGACTACATTGACCGATCCGGGAACCAGGTGCTCAGCATGGCCCGACTGGCCAAAGATGTCCTGGCCGAGATCCCTGACCAGCTGCTGTCGTTCATGAAGAGCAGAGGCATTGAACCCAGACCAGCCCTCTCCCCCTCTCCTACACCACAGATAAACGTCCACCTCTGATCCTAGAGCAGTATTTTATCCCCTCCCTCAAACAGCTCTACGTTCACGTCTGAACCCCCCCGGGTCCGTCACTGGGGATGCACATTTTTACTTTCCACATTGGTTAGCAGTAGCACATTATATAGTTACAATAATAATCAACTGAATCAGGAACATGTTAATATAAGCGTGTGGTGTTATACTTTATAATCAGCCAGTGATCATTCAAAAGAAGTTTGTGCTTGTCTGGAATGGAAGATGTGGAAGTAAATAGAAGGTGAATTTCCTGAAAAGAAATGTCTGGGTCGTTTTTCACCCAAAAATCTAAAGATGAGAAAAACA

Function

symbol description
cpne9 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE9 (copine family member 9).
cpne5 Predicted to enable calcium-dependent phospholipid binding activity. Involved in positive regulation of dendrite extension. Located in extracellular exosome.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02755511_02767404.mRNA True 2045 mRNA 0.47 13 2754993 2767725

Neighbor

gene id symbol gene type direction distance location
CI01000001_02740511_02753173 NA coding upstream 1413 2740511 ~ 2753580 (+)
CI01000001_02708472_02723568 CMTR1 coding upstream 30984 2708472 ~ 2724009 (+)
CI01000001_02666739_02671962 FBXO25 coding upstream 82585 2666469 ~ 2672408 (+)
CI01000001_02657735_02658754 NA coding upstream 94392 2657447 ~ 2660601 (+)
CI01000001_02632096_02633641 NA coding upstream 120000 2631159 ~ 2634993 (+)
CI01000001_02787356_02792545 KLF15 coding downstream 17599 2785324 ~ 2793251 (+)
CI01000001_02838290_02859249 NA coding downstream 70565 2838290 ~ 2859694 (+)
CI01000001_03061892_03081206 NA coding downstream 293215 3060940 ~ 3081209 (+)
CI01000001_03200059_03206898 NA coding downstream 432244 3199969 ~ 3206996 (+)
CI01000001_03306094_03325686 NA coding downstream 538169 3305894 ~ 3327549 (+)
G13973 NA non-coding upstream 177179 2577519 ~ 2577814 (+)
G13971 NA non-coding upstream 189686 2564734 ~ 2565307 (+)
G13869 NA non-coding upstream 314901 2425601 ~ 2440092 (+)
G13924 NA non-coding upstream 373853 2380892 ~ 2381140 (+)
G13922 NA non-coding upstream 386782 2367979 ~ 2368211 (+)
G14555 NA non-coding downstream 205134 2972859 ~ 2973084 (+)
G14597 NA non-coding downstream 310465 3078190 ~ 3078503 (+)
G14752 NA non-coding downstream 548428 3316153 ~ 3316434 (+)
G14753 NA non-coding downstream 549496 3317221 ~ 3317458 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 1083989 1667762 ~ 1671167 (+)
G13051 NA other upstream 1709841 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 2262936 483853 ~ 488825 (+)
G12614 NA other upstream 2444052 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 848523 3618075 ~ 3621451 (+)
G15794 NA other downstream 2293493 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 2519024 5279837 ~ 5287698 (+)
G15995 NA other downstream 2944160 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 4764847 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location