CI01000001_02838290_02859249


Basic Information

Item Value
gene id CI01000001_02838290_02859249
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2838290 ~ 2859694 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02838290_02859249.mRNA
TGAAGTGACGGTGATATGTGTATGGAAACGGTTTAACTGGATGTTCTTTGAAGGGAGAGGAGCAGTGGGTTTCCCTGTCAACACCATCTTCTCAGTGGCAGATGAGAGGGAGCGGACCGGAGATTCCACCATGGCAGGGGACGAAGTTCGACAGAGAAAAGGAGGTGGACGCAAGAAGTCCAAAAAGGGGAAAGGGAAGGGGCAGGGTGGTTTGGATCGGGCTGGCAGTCTAGATGGGCCAAATGACCTGCTGTTGCCGCCTCCCACCATACCACCTAAAAAGCCTGTGGAGGAGAGGACCAAAACGGCCCAGGCTAAGATAGAAGAGGAGTCGGCAATTTCTATCTGCCTGCAGGTGCTGTTCCCCTACCTGCTGGCTGGGATGGGGATGGTGATGGCAGGTATGGTGCTGGACAGTGTGCAGGTGTGTGTTGGTGATGTGGGTCTGGATTTGCTGCGTCACTGTGCCGTGCTCACGACCGAGCTGGGGTTGTTTTTAGCTGAATCATGCCCCTCTTCCCAACGTGTCCTCTACGCACTGGCAAGCGGTAGAGTGGAACCCTCGTCGAACCTTCCAGTCACGTTGGGGAATGGGTTAACAGCGATGGTGGTCACTCAGTTAGAGCTGGAGCTCTGCTATCAGGGGAAGAAGCTCAGAGGTTTCACCTGCAAGCTCACCCGTTCGGCTCATGGCTTCCTGCCGGAGAGCTCGTACATCATCGCTGCGCAGGTCTTGCTGCCGTATCTGCTGGGCGGCCTGGGGATGGTGGCAGCTGGTATCGTCATGGACATTGTCCAAATAGAAGCGGTTGGCATGGACTGTGTTGTGTGTCTATTAATTGAATTCTCGTGGGGGCAGCATTGGGATGTGTTTAAGGTGATCACAGAGGTGTTTATCCTGGTACCTGCTCTGGTCGGGCTCAAAGGAAACCTGGAGATGACTCTAGCATCTCGTCTCTCTACTGCTGCTAACACTGGACAGATGGACGACCCCAAACAGCAGTGGCTGATGGTGACCTGTAACCTTGCTCTTATTCAAGCTCAGGCCACTGTGGTGGGCATCCTGGCAGCTCTTGCGGCTGTAGGGCTTGGCGCTCTGTCCAGAGGGGGTATAGAGCTGGACCAGGCAGCTGTCCTGTGTGCTAGCAGTGTTACCACTGCATTTGTGGCCGCTCTTTCCTTAGGTCTGGTGATGATTGGTGTGATCATTGGCTCCAGGAAGGTGGGCATCAACCCTGATAATGTGGCCACTCCAATAGCAGCCAGTCTAGGAGATCTCATCACTCTTTCTCTATTGGCTGGAGTCAGCAGCACATTGTTCCAGTACAGAGATGTGTGGTATTTGTCTCCGTTGGTGTGTGTCTTCTTCCTGCTGCTCATTCCTATCTGGGTGCTCATCGCTAGAAGGAGTCCACAGATTAAAGAGGTTCTGAAGTCCGGCTGGCAGCCTGTTATAGTGGCCATGTCCATCAGCAGTTTCGGAGGCCTTATTCTTGATAAGACTGTGAGTGATCCGAACTTTGAGGGCATGGCGGTCTTCACACCAGTCATAAACGCTGCACATGTGCTCTACCAATGTCCTGTCTTGACTCAACACTATGTTGGCGGAAACTGCACACATCCCAATGGGAATAGAGCATGTGTGGGGGGGAATCTGGTGGCCATCCAGGCCAGTCGGATCTCCACCTACCTTCATTTCTTGAGCGTACCTGGAGTCCTGCCCTATAAGATGAGACAGCACTGGCCCAACCCCTGTGTCACATTCTTCTCCTCAGGCGTGAACTCAAAGTCAGCGCGGGTGCTGTTCCTCCTGGTGGTTCCAGGTCATCTCTTGTTTCTTTTCGCCATTAATATGCTTCAAGGAGGTCACACTGCCATCACGCCAACATTTACCTGCTGCTACCTAAGTGCTGCGCTGCTTCAGGTCGGGATCCTCATTTATACGGCGGACTTGATTGTGCGTTTGATGTGGAGGAAAGGTCTGGACCCTGATAATTTCTCCATCCCATACCTGACTGCACTGGGAGACCTGTTGGGCACGGGATTCCTCGCCCTGTGTTTCCATCTGGATAGGTTGACTGGAAATTGGCAGGTATGGACTACTACCTGACGGGTCTGTAACATGATTATATTCTAGGTGTGTTGTCCTGTTGCTTCAATGATGCTGCTCTCATACACACTAGTCACCTGATTACTGTATATTAAGGTCTAACTTTAGGTGCGAGTGTCACAAACTTTTATGTGCCATGTATAAATTAAATTTGAAGTTTACAAGATATAAAACCCTGAAGGATTCTAGTACATCTCTGGTGAATATTGTTTTTGAATATCTGATTCAGGATTGATTTTAAAGTATCAAACCTTTTGAAGGTCATTCCTTTGCTGTTTTAGTAACTATATACAAGATCATAAGTGCTGCTACATATTTTTACTAGATACAATATCTCATATACAGAGGGCCCAATGTACCTCTCAGTTTGTAATTTTTTTGCACCTAAAATATTTTTTCTTGAAATACCACACTTTAGAAAAAAGGTGAAATAACTATCGTAGTA

Function

GO: NA

KEGG:

id description
K15122 SLC41A; solute carrier family 41

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02838290_02859249.mRNA True 2555 mRNA 0.50 16 2838290 2859694

Neighbor

gene id symbol gene type direction distance location
CI01000001_02787356_02792545 KLF15 coding upstream 45039 2785324 ~ 2793251 (+)
CI01000001_02755511_02767404 CPNE9, CPNE5 coding upstream 70565 2754993 ~ 2767725 (+)
CI01000001_02740511_02753173 NA coding upstream 84710 2740511 ~ 2753580 (+)
CI01000001_02708472_02723568 CMTR1 coding upstream 114281 2708472 ~ 2724009 (+)
CI01000001_02666739_02671962 FBXO25 coding upstream 165882 2666469 ~ 2672408 (+)
CI01000001_03061892_03081206 NA coding downstream 201246 3060940 ~ 3081209 (+)
CI01000001_03200059_03206898 NA coding downstream 340275 3199969 ~ 3206996 (+)
CI01000001_03306094_03325686 NA coding downstream 446200 3305894 ~ 3327549 (+)
CI01000001_03482362_03485979 TMED4.S, TMED4 coding downstream 622668 3482362 ~ 3487253 (+)
CI01000001_03506220_03510588 COQ10A coding downstream 646526 3506220 ~ 3510660 (+)
G13973 NA non-coding upstream 260476 2577519 ~ 2577814 (+)
G13971 NA non-coding upstream 272983 2564734 ~ 2565307 (+)
G13869 NA non-coding upstream 398198 2425601 ~ 2440092 (+)
G13924 NA non-coding upstream 457150 2380892 ~ 2381140 (+)
G13922 NA non-coding upstream 470079 2367979 ~ 2368211 (+)
G14555 NA non-coding downstream 113165 2972859 ~ 2973084 (+)
G14597 NA non-coding downstream 218496 3078190 ~ 3078503 (+)
G14752 NA non-coding downstream 456459 3316153 ~ 3316434 (+)
G14753 NA non-coding downstream 457527 3317221 ~ 3317458 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 1167286 1667762 ~ 1671167 (+)
G13051 NA other upstream 1793138 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 2346233 483853 ~ 488825 (+)
G12614 NA other upstream 2527349 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 756554 3618075 ~ 3621451 (+)
G15794 NA other downstream 2201524 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 2427055 5279837 ~ 5287698 (+)
G15995 NA other downstream 2852191 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 4672878 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location