CI01000001_02666739_02671962 (FBXO25)


Basic Information

Item Value
gene id CI01000001_02666739_02671962
gene name FBXO25
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2666469 ~ 2672408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02666739_02671962.mRNA
GTATAAAACACCTTAAACGACATGGTTAACATTAACATTTTTCTAGCTGTTGTGCATTTTAATAATTTGATTTTTTTTTCTAACTTTATTGTTTTTTCCTCATTAAGCTCTGTACTCACAGCTGGCTGAGGGGATTACAAATAAACCTATTACTTCTATCCAAAACCAAGCAGTGGAAATGTTTATTTTGTGATGTTATTATTTTCCGTCTATTCCATCGTTCATTCTATCCATTTCCCCTCCCCCCTCACAAAATCAAAACATGACAACATGTGCAGCGTCTGTGTCACGTGTAAGAAGCTGCAGAGACAGAGAGCTCGGGATAAATCGGTTGGAGATAAGAGTCTCTTGTATTCAGGTCTTTGGAGCAGGTGGAAGAAGATGCCGTTCTTGGGCCAAGACTGGAGATCACCAGGCTGGAGCTGGATCAAAACTGAGGATGGCTGGAAACGCTTTGAATATTTCAGCCACAAATTGGGAGATAACATCAATGAACTTGGCTTGGAAGAGTTGGACAATGACAACAAGGAGAACATCTTTGTGGGAGATGTCTGTGAAGAGAGGTGGATCTACGTTCAGAAGGAGAGTACGAGAGAGAGACATGGCTACTGTACTCTTGGTGAGGCTTTCAATCGTCTGGACTTTTCCAGTGCCATTCAGGATGTGCGGCGATTCAACTATGTAGTCAAACTTTTGCAGTTGATTGCCAAGTCCCAGCTGACGTCTTTGAGTGGAGCTGCTCAGAAAAACTATTTTAATGTCCTGGAGAAGATTGTGAGAAAAGTTCTGGATGACCATCAGAACCCGCGACTGATCAAGGCGTTGCTGAATGATTTAAGCTCCACCCTCTGCATCCTCATGCGAGAAGTTGGGAAGTCTGTGCTGATTGGCAACATCAACATTTGGGTCTGCCGTTTAGAAACCATATTAAACTGGCAACAGCAGCTCAACAATTTGCAAATTCCAAAGCAAGTTTCAAATGGGATGACACTGAGTGACCTCCCTTTGCACATGCAAAACAACATCCTGTACAAGTTTACTGATGCCTGTGACATCATCAATCTGGGACAAGCCACATCAACACTGCACATGCTCAGTGAGGACCGGCAACTGTGGAAGAAACTGTGCCAGTTTCATTTTGCTGAGAAACAGTTCTGCAGGCACTTGATTCTGTCAGAGAAGGGCCATGTGGACTGGAAGCTGATGTTTTTCACACTTCAGAAATACTACCCTCAGAAAGAACAGTACGGAGACACTCTGCAGTTCTGCAGGCACTGTAGCATCCTCTTCTGGAACCCCAGTGTTGTGCATACAGTAGATTTTCTAGAATTGCAGTTTGTGGTCAGAAACCCCTTATAGACACAGTTATTAATAGATAAGCAACAGTTTGTTTTTTATTTAAAACATAGGGGGCCAGTATTAACGTATACACTACCGTTAACTTTTGCTGTCAGTAAGATTTTTAAATGTTTTTGAAAGTAGCCTCACCAAGGCAGTAATATTGTGAAATATTATTATTATTTAAAATAGATGATATATTTTAAAATGTAATTTATTCCTGTAATGGCAAAGCTGAATTCAGTGTTAGAAATACTAATATGCTGATTTGGTGCTCAAGAAACATTTCTTAGAAATGTTAGAAATGAAATCTTTTGTAACTTTATAAATTTCTTTACTGTCACTTTTGATAAATTTAATGCATCCTTGCTGAATAAAAGTCATTAAAAAAAGAAAGAAAAAAGAATCTTACTGACCTCAAACGTTCAACGGTTGTATAATTAAAAAAAATGAAAATTCACTTAAAA

Function

symbol description
fbxo25 Predicted to be involved in protein ubiquitination. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Is expressed in epiphysis; gut; hindbrain; olfactory placode; and peripheral olfactory organ. Orthologous to human FBXO25 (F-box protein 25).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K10305 FBXO25_32; F-box protein 25/32

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02666739_02671962.mRNA True 1805 mRNA 0.39 10 2666469 2672408

Neighbor

gene id symbol gene type direction distance location
CI01000001_02657735_02658754 NA coding upstream 5868 2657447 ~ 2660601 (+)
CI01000001_02632096_02633641 NA coding upstream 31476 2631159 ~ 2634993 (+)
CI01000001_02591835_02593987 TMEM18 coding upstream 72139 2591835 ~ 2594330 (+)
CI01000001_02578747_02580442 NA coding upstream 85976 2578579 ~ 2580493 (+)
CI01000001_02567315_02569427 TUBA1C, TUBA1B, TUBA1A, TUBA1A.S, TUBA1D coding upstream 96864 2566675 ~ 2569605 (+)
CI01000001_02708472_02723568 CMTR1 coding downstream 36064 2708472 ~ 2724009 (+)
CI01000001_02740511_02753173 NA coding downstream 68103 2740511 ~ 2753580 (+)
CI01000001_02755511_02767404 CPNE9, CPNE5 coding downstream 82585 2754993 ~ 2767725 (+)
CI01000001_02787356_02792545 KLF15 coding downstream 112916 2785324 ~ 2793251 (+)
CI01000001_02838290_02859249 NA coding downstream 165882 2838290 ~ 2859694 (+)
G13973 NA non-coding upstream 88655 2577519 ~ 2577814 (+)
G13971 NA non-coding upstream 101162 2564734 ~ 2565307 (+)
G13869 NA non-coding upstream 226377 2425601 ~ 2440092 (+)
G13924 NA non-coding upstream 285329 2380892 ~ 2381140 (+)
G13922 NA non-coding upstream 298258 2367979 ~ 2368211 (+)
G14555 NA non-coding downstream 300451 2972859 ~ 2973084 (+)
G14597 NA non-coding downstream 405782 3078190 ~ 3078503 (+)
G14752 NA non-coding downstream 643745 3316153 ~ 3316434 (+)
G14753 NA non-coding downstream 644813 3317221 ~ 3317458 (+)
CI01000001_03306094_03325686 NA non-coding downstream 653669 3305894 ~ 3327549 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 995465 1667762 ~ 1671167 (+)
G13051 NA other upstream 1621317 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 2174412 483853 ~ 488825 (+)
G12614 NA other upstream 2355528 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 943840 3618075 ~ 3621451 (+)
G15794 NA other downstream 2388810 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 2614341 5279837 ~ 5287698 (+)
G15995 NA other downstream 3039477 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 4860164 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location