CI01000001_02567315_02569427 (TUBA1C, TUBA1B, TUBA1A, TUBA1A.S, TUBA1D)


Basic Information

Item Value
gene id CI01000001_02567315_02569427
gene name TUBA1C, TUBA1B, TUBA1A, TUBA1A.S, TUBA1D
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2566675 ~ 2569605 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02567315_02569427.mRNA
ATATAAAAATAGAATATACAAGTATATTCTTTTGCAATTACTGCATAATTAAAATCTAATCACCATGTATTATAATTAATAAGTGTGACTTAAATGATATCCTAACAAAAATGCACAAATAGAATGATTTTTTTTTCCTCCATCAGAGATTGACATAGAATTTTCTTGAAATTTGCATCCACCCCTCCTCCCATCCGCATGAGCAGTAAACTGGGTGGGGACTGCAGCTGTCTGCAGAAGCTCATGCCTGGCCTGTGCAGCAGATGACTGGATTTCTATTCCTGTTCTATTCCACAGCTGTTATTGTCTCCACTGAGATTTTGCATTAAATGTGTTCATGCATTTTATTATTTTGCTGATATTGTTTTTATTGAATTTCTGGGAACTGCCTTTGTTTATATCAAGCTGTCTTTAGGGAAATTCAATGATGCAACCAAATATTCAAGATTAGCACTGACCAAATATAAACGTTTAAGAACTGATCATTAAAAAATATATATTAATCAAAGAATATTCTGAATTCCCTTCAAATAGTGGATACAGCCCTTGAGAAAATGCAATTCAGTTTCTGCATCTAAAAACCTGCTATAACTAATGCCCCTCCATTATTGAAATTCATACTCTTTTGTAAACCGCTGAGATGACAGATAAATGGGAAAAGCGTGAGTGCATCTCCATCCACGTTGGTCAAGCTGGAGTCCAGATTGGCAATGCCTGCTGGGAACTCTATTGTCTTGAGCATGGCATCCAGCCGGACGGGCAGATGCCCAGCGACAAGACCATTGGAGGAGGTGATGACTCCTTCAACACCTTCTTCAGTGAGACTGGAGCTGGAAAACACGTCCCCAGGGCTGTGTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGCACTGGGACATACCGTCAGCTGTTCCACCCTGAGCAGCTCATCACAGGAAAGGAAGATGCTGCCAATAACTACGCTCGTGGACACTACACTATTGGAAAAGAAATCATTGACCTGGTGCTGGACAGGATTCGCAAACTGGTATGTAGTTGTAAACAAACAAACAAACATAAAGTGAATGATATATTATGTTTGGTTACTGACCAGATGGTTTCTTTTCAGGCTGACCAGTGCACAGGCCTCCAGGGTTTCCTGGTGTTCCACAGCTTTGGTGGTGGAACCGGTTCTGGCTTCACCTCTCTGCTGATGGAGCGTCTGTCTGTGGACTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCTGCTCCTCAGGTCTCCACCGCTGTGGTAGAGCCTTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTAGACAATGAGGCCATTTATGATATCTGCCGTAGGAACCTCGACATTGAGCGTCCTACTTACACCAACCTCAACAGGCTCATTGGCCAGATTGTGTCCTCCATCACAGCCTCCCTCAGGTTTGATGGAGCCCTCAATGTCGATCTCACTGAGTTCCAGACCAACTTGGTGCCTTATCCTCGTATCCACTTCCCACTGGCTACCTATGCCCCAGTGATCTCTGCAGAGAAGGCTTACCATGAGCAGCTCTCTGTGGCTGAGATCACTAATGCTTGCTTCGAGCCAGCCAATCAGATGGTGAAATGTGACCCACGTCACGGCAAGTACATGGCTTGCTGCCTGCTGTACCGTGGTGATGTGGTGCCCAAAGATGTGAACGCTGCAATTGCCACCATCAAGACCAAGCGCACCATCCAGTTTGTGGACTGGTGTCCCACTGGTTTCAAGGTCGGCATCAACTACCAGCCTCCCACTGTGGTTCCAGGTGGTGATCTGGCTAAAGTGCAGAGGGCCGTGTGCATGCTGAGCAACACCACAGCTATTGCTGAGGCCTGGGCTCGTCTCGATCATAAGTTCGATCTGATGTACGCCAAGCGTGCCTTTGTGCACTGGTATGTGGGTGAGGGTATGGAGGAGGGTGAGTTCTCAGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAAGATTACGAGGAAGTCGGTGTCGACTCCATCGAGGGTGAAGGAGAGGAAGAGGGCGAGGAATATTAAAATGTTCACGAATGTCTAAAATTGAAAACAGTAGACCGTTAATTTACAAACGATATACATGAGGTATCAAGTGTAAAGTCTACTCCTAAATGTTAGGGACACATTCTTGATCAGTTGATGTATTGTTATGGCCAGTATGACTTTTATTTGTGGAATTTGCTTGCCAAATTTTGACTGA

Function

symbol description
tuba1b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in several structures, including ectoderm; integument; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human TUBA1B (tubulin alpha 1b).
tuba1c Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in central nervous system; forebrain; nervous system; neurons; and peripheral nervous system. Orthologous to several human genes including TUBA1B (tubulin alpha 1b).
tuba1a Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within negative regulation of apoptotic process and optic nerve formation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in lissencephaly; lissencephaly 3; microcephaly; and visual epilepsy. Orthologous to human TUBA1A (tubulin alpha 1a).

GO:

id name namespace
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02567315_02569427.mRNA True 2273 mRNA 0.45 3 2566675 2569605

Neighbor

gene id symbol gene type direction distance location
CI01000001_02526729_02544932 JPH2 coding upstream 21689 2526729 ~ 2544986 (+)
CI01000001_02505727_02507172 MFSD5 coding upstream 59318 2505395 ~ 2507357 (+)
CI01000001_02492831_02495337 NA coding upstream 71264 2492431 ~ 2495411 (+)
CI01000001_02393859_02406849 CALCOCO1A coding upstream 159440 2393859 ~ 2407235 (+)
CI01000001_02166796_02171151 CBX5 coding upstream 394496 2166796 ~ 2172179 (+)
CI01000001_02578747_02580442 NA coding downstream 8974 2578579 ~ 2580493 (+)
CI01000001_02591835_02593987 TMEM18 coding downstream 22230 2591835 ~ 2594330 (+)
CI01000001_02632096_02633641 NA coding downstream 61554 2631159 ~ 2634993 (+)
CI01000001_02657735_02658754 NA coding downstream 87842 2657447 ~ 2660601 (+)
CI01000001_02666739_02671962 FBXO25 coding downstream 96864 2666469 ~ 2672408 (+)
G13971 NA non-coding upstream 1368 2564734 ~ 2565307 (+)
G13869 NA non-coding upstream 126583 2425601 ~ 2440092 (+)
G13924 NA non-coding upstream 185535 2380892 ~ 2381140 (+)
G13922 NA non-coding upstream 198464 2367979 ~ 2368211 (+)
G13898 NA non-coding upstream 269464 2290804 ~ 2297211 (+)
G13973 NA non-coding downstream 7914 2577519 ~ 2577814 (+)
G14555 NA non-coding downstream 403254 2972859 ~ 2973084 (+)
G14597 NA non-coding downstream 508585 3078190 ~ 3078503 (+)
G14752 NA non-coding downstream 746548 3316153 ~ 3316434 (+)
G14753 NA non-coding downstream 747616 3317221 ~ 3317458 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 895671 1667762 ~ 1671167 (+)
G13051 NA other upstream 1521523 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 2074618 483853 ~ 488825 (+)
G12614 NA other upstream 2255734 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 1046643 3618075 ~ 3621451 (+)
G15794 NA other downstream 2491613 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 2717144 5279837 ~ 5287698 (+)
G15995 NA other downstream 3142280 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 4962967 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 unknown CM030137.1 CM030137.1 24433793 ~ 24454385 (+)