CI01000001_03306094_03325686


Basic Information

Item Value
gene id CI01000001_03306094_03325686
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3305894 ~ 3327549 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03306094_03325686.mRNA
ATACAAAACAGGCGAGCGAAAAGGAAAAACACTACGGCACCAGTTAATAATACCCTTAACAGCTGGTTTGGCATCAGTGAAACCAACCCTATGCTTAACATAATACATTGTGAGTGTCGTGACAATGCTATCCGGGATCAGTTGTAGGGGCCATAGAAAACTCCACAGAGGGTGGTGGTAAAGCTGTAGTCTGCAAGCAGATGGCAGATAGCATTGATCGGATCCAAGCCCCGATAAGGCTGAAGGATAGATACGCTGTCCTGGAAACTAGAAAGGAGAGAGGTCAAGGGCCGACCCAAGATGGGCGAAGGCTGCAAAAGCTCATTCGAGGGCCCTTGACACTTTCATTCACATTGGTATGTGACCTGACAATGAGATCAAAGGTCACACTTGGTATTTCAAAGCGCTGGTCGAATAGTTGGAGTAAACTCCAGGAACTGGTCAAGACACAGCAGAAAGAGGGCTTGAAAAACACAATAAGAATGAGAGCTCATCACTGCTGTCCTGACATCATGAGTGGCACTGATCCTACACTGAGGTTCCCAGCTGAGACCTCCAGTCTGTTGAGGGAGCGGGAAAAGCTGCATCTCCTCTGGACGACGGCCATGACAAACAAAACATGGCCTGACCCTTCAATCTCCAAACCCTGCTCAAGCCAAAGAACTATTTATACACACACAATAACTCAGAAAAGGAAATGTGTCACAGAGGCAAACCGCTTTGACATAAAGGTGGACATTTACGCCTATAACGTTGAGATTGATGCTCAAACATCACATCATAACACAAACTTCATCAACTACCAAGGACTCTATTGGTTAAAGTGCGATACTGTTAGTGTGCAACGGACAGAGCAGGGGCAAGGTTACAGCGACAAAGGCCGTAAAGGTTTGTGCACTGTGGTCACAATGACTAACACACGAGCGGACGCCCACACAGAATCGGCGCAGATGAGGGTGGTGTGTCAGTTTGGTAGTGATGGGGGATGCAGTGGTGTCTGTGTAGGGTTATGGAGAGTTGTCCTGCCAGAGGGGAAGAGCAGTGGCCTGTGTCTGTTAGCATTTCGCTTCACTTCTCCCTGTGTTAGCCTCACTCGACCTCCTCAAGCAGCCTTCACCTCCTCTCGAACCTATCACAGTGAAGAGCAGAAATAGTGAGAAAAATAATACTGAAAACAAAGGACTTTTCCATTAGAAGCGTCAATGTACGACAAAGAAGCTTCTGCTGCCAGCAACCCAATATGTTCTAAGAATATTTTGCTAATGTTCCCATAAAGTTATGAAAAACTTCCAAAATGTCCAGTTTAATGTTTTAAATGCCTTTTCTTGGTTATTCAAACGTTAAAGGGATAGGTCACCCAAAAATGAAAATTCTGTCATTGATTACTCACCCTCATGTTGTTCCAAACACGTAAGAGTTTCATTCATCTTCGGAACACAAATTAAGATTTTTTCAATGAAATCTGAGAGCTTTCTATCCCTCCATTGACAGCTACGCAACTGACAATTTGAAAAAAACAATTGACAATTAGTCCACATTTTCTGAAGACACTTGACCGTTTCATATGATGAACAGATTGAATTTAGGCTTTTATTCACATATAAACATTCATCAACACACATCAGTTGTGGTAAACGGAAGCTCAAGCATGTTTGCTTGACATGCGAAAACCAATAAGATTCATTCTCGTGTGTTACTCAGCATGTTTGAGCTTCCGCTAGAGGTTTGCTCTTGCGCATCAAGCAGGTTTGTTTGAGCTTCTGTTTATGTTTGCTGATCAATGTTTATATGTAGATAAAAGCCTAAATTTGGACAAAACCACTCAATTCATATAGATTATTTTTACAATCTTTTTGAAGCCTCAACGTGTCAGTTGTGTAGCTGTCTATTTAGGGACAGAAAGCTCTCAGGTTTCATCTAAAAGATCTTCTTTTGTGTTCAGAAGATGAACGAAAGTCTTACGGGTTTGGAATGACATGACAGTATTTAATGACAGAATTTTCATTTTTGTGTGAACTAACCCTTTAAGGAAATATTCTATTTTTTAATTCAGCAAACATTATAGAAAAGTTACTTTTGATTGTTCTCAGAATGTTCTGAAACAAGTAGTAACGTTTAAAAAAAATGTCCAACTAAAAAAATTTATTAATTTAATTTAAAAAAGCATTCATTTTATTTTTTTTTAAATCATTCCATAAATGATCTATAAATAATGTTTTTGTGCTAACATTTTGAGAACATTTTTAAAGACCAGATAGCTTTGAACGAACGTTTTATTAACGTTACTGGAAGAATGTTTGTTCATAACTTTGAGAGAACCTTGCCAGAATGTTAGCCAATGTTCTGGGAATGATCCCTGTTATCTAAGGCCCCGTTTACACTAGTGCATTTTTTATTTAAAACGGCGTTTTAAAATGAAAACGATCCTCGTCTACACTGGCATTTCCACAGCGTTTCAGAAACGATCTCCGTCCATAATACACAGCCGAAAACGCATGTCACATGACCGTTCATGCACACTGGGCATGCGCGTACAAGTGCAGCTGCAGTATTAAAAAATGCAGAGTTTAACTGCACAGTGGCTGCTAAAAATGACATCAAAGCCAGCAAAGATTGCAGTTCAGTCTCCATGTTATTGTTTACACGGTCGTCAAGGATACGCAGAGCGAACATGGGCAGCCACACCATCGTTTTCAAAAGTCCCCATTTTGGTCCGTTTATACTGAAACGCAACCCCTGTGTTTTCAAACTAAAACGGGTCTGCAGCATTTTCGAAAGTCTCCGTTTTCGAGGTTCGGAAACACCAGCGTAGTGTAAACAACAGGCATAACCAAAGCAAAATTTGTGTGTTTTAAAACAAAAATGCACTAGTATAAATGGGGCCTAAGAATATGCTTCAACATTAGGCAAAGTAGACAAAGTATATATATTTTAAATAAATAAAAACTGATTTAGAATGAGTTTATTATATGCTGTGTAAGTTAGTTTCTTTCCCTGTTATAGTTTTGAATAGATGA
>TU16502
AAGACACTTGACCGTTTCATATGATGAACAGATTGAATTTAGGCTTTTATTCACATATAAACATTCATCAACACACATCAGTTGTGGTAAACGGAAGCTCAAGCATGTTTGCTTGACATGCGAAAACCAATAAGATTCATTCTCGTGTGTTACTCAGCATGTTTGAGCTTCCGCTAGAGGTTTGCTCTTGCGCATCAAGCAGGTTTGTTTGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03306094_03325686.mRNA False 3017 mRNA 0.40 5 3305894 3327549
TU16502 True 214 lncRNA 0.40 1 3326077 3326290

Neighbor

gene id symbol gene type direction distance location
CI01000001_03200059_03206898 NA coding upstream 98898 3199969 ~ 3206996 (+)
CI01000001_03061892_03081206 NA coding upstream 224685 3060940 ~ 3081209 (+)
CI01000001_02838290_02859249 NA coding upstream 446200 2838290 ~ 2859694 (+)
CI01000001_02787356_02792545 KLF15 coding upstream 512643 2785324 ~ 2793251 (+)
CI01000001_02755511_02767404 CPNE9, CPNE5 coding upstream 538169 2754993 ~ 2767725 (+)
CI01000001_03482362_03485979 TMED4.S, TMED4 coding downstream 154813 3482362 ~ 3487253 (+)
CI01000001_03506220_03510588 COQ10A coding downstream 178671 3506220 ~ 3510660 (+)
CI01000001_03593892_03602210 RACGAP1 coding downstream 266343 3593892 ~ 3602260 (+)
CI01000001_03609191_03615121 NA coding downstream 281642 3609191 ~ 3615416 (+)
CI01000001_03618075_03620436 NA coding downstream 290526 3618075 ~ 3621451 (+)
G14597 NA non-coding upstream 227391 3078190 ~ 3078503 (+)
G14555 NA non-coding upstream 332810 2972859 ~ 2973084 (+)
G13973 NA non-coding upstream 728080 2577519 ~ 2577814 (+)
G13971 NA non-coding upstream 740587 2564734 ~ 2565307 (+)
G13869 NA non-coding upstream 865802 2425601 ~ 2440092 (+)
G14762 NA non-coding downstream 26989 3354538 ~ 3354774 (+)
G14765 NA non-coding downstream 31659 3359208 ~ 3359432 (+)
G14769 NA non-coding downstream 41653 3369202 ~ 3369498 (+)
G14770 NA non-coding downstream 42135 3369684 ~ 3369887 (+)
G14775 NA non-coding downstream 47126 3374675 ~ 3375008 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 1634890 1667762 ~ 1671167 (+)
G13051 NA other upstream 2260742 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 2813837 483853 ~ 488825 (+)
G12614 NA other upstream 2994953 309144 ~ 310941 (+)
G15794 NA other downstream 1733669 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1959200 5279837 ~ 5287698 (+)
G15995 NA other downstream 2384336 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 4205023 7531541 ~ 7540586 (+)
G14753 NA non-coding upstream 8619 3317221 ~ 3317458 (+)
G14752 NA non-coding upstream 9643 3316153 ~ 3316434 (+)

Expression


Co-expression Network