CI01000001_03609191_03615121


Basic Information

Item Value
gene id CI01000001_03609191_03615121
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3609191 ~ 3615416 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03609191_03615121.mRNA
ATGGCAGAAAGCAAGGCCAGCATCAGCTCGAAAGGAGGGGCCAATGTGCTTGCTAAACGGATGCAGAAACAATTCAACAGAGCACAAGAGAAGGTATTGCAGAGACTTGGCAAATCTGAAGAGACCAAAGATGAGCACTTTGAGGAGTGTGTTATGAACCTCCAATATCAACAGAACGATGGATACAAAATATACAAGGACCTTAAAGCGTACCTCAACGCTGTCACAGTAATGAAGGATGCCTCAGGTCGACTGTTTCAGTCCTTGTTTGATGCCTATGATGATAAATGGGATGGTGTAGAAGATCTTGGGGAAGTTGTGGAGGGAGAAGAGCTTCTATGGAAAGATTATGAGAGCAAGCTGCGTGACCAGGCATTACTCACTATGGAGTCTTACATGAGCCAGTTTCCAGATGTCAGGGAAAGAGTGGCCAAGCGAAACAGGAAACTTGTAGACTATGATTCTGCTCGCCATCACCTGACAGGGCTGCAGAATGCTAAAAAGAAGGATGATATCAAAACTGGAAAGGCAGAGGATGAGATGAATGCAGCCAAGGTGATATTTGAGGACATGAACAGGGAGCTGAAGATGGAACTGCCTATTCTATATGACAGTCGTATTGGTTGCTATGTCACAGTCTTCCAAGCCGTTTGCAACCTCAGAGACATCTTCTACAAGGAAATTACCAAGAACAATGAGGTTCTACAGACTGTGATGAAAGAGCTGAGCATCCAACATCCAGACAAGAGCTTTGTCGTGAAGAATTTGAACCGCTCAGGTTCCTTGAAGAGAAGGTCATTTAGAGACACGTTGTCTCCCAGATCACTTAAAAGCTTTTATGATTTCCACAAGAGTTACAGCCCTAGAGGCTCTCTCAGGAGAGACGGCTCATCCAGTTTTAGGTCTGACAGATCAGCATATGGGTCATACAGCCCCACCAGCCCTCAACCCCTTTATGAGAACGTCTCTGGTGCCAAAGGTGCAAAAGGCAGTCCTATAAGATTAGACGACACTACAGAGGAAGGTACCCCTTCCCATGAGCCACAGGTGGAAGACACCAGCACCTCTGACGATAAACCAGTGGTAGAAGACAAGAAAGCTGAAAAGAAAGAGTCCTCACAAGCCTCAAGTCAAGATGGACAGAGGGATACGCCAAATGAGGCGGAGTCTTCTGAGGAGGACAGCGATGAGAGTGAACTGAAACAAAACTCGAGTCCCACCGAATGCTCCAAGATCAAAGATCAAATATCATCTGAGAAGGTGGAGGATGGTGGGCCTTCTGGTGTGGAGAATGGAATAGCTCGTGACGTTAAATCAGATGTGGAAGAAACTGATGCTTCAAGCTATGCTCTTAACAAGGGTGACCATCCACCAGGAGAGAAAGGAAATACGCTGGAACTGGACAGCAAATTCATAAGAACATAAGAGAGGATTTCCAAATGCTGTACTGACTTGGATTCATTAATTTGTTCATCCCTGATCTTTTGAGATGTTTTTTTTTTCTTCTTCAGAGAAATGTTTAAATTCTGAGTACAGTTTCTTTTAGAATATAATAATTTTCCTGTATTGTCTTTTATCCTTCACATGTGGTGGTCTTTCTTATGGATTTTAATGCTTTTAGATATATCTTTATGTGACATCCATTTATCTAATTGACAAATGATCACAGGAAATAATGGAAATGTTTAAAATGTACCTGACAATCATCCCAAAACTTTTA

Function

NR:

description
Bridging integrator 2b

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03609191_03615121.mRNA True 1720 mRNA 0.43 13 3609191 3615416

Neighbor

gene id symbol gene type direction distance location
CI01000001_03593892_03602210 RACGAP1 coding upstream 6931 3593892 ~ 3602260 (+)
CI01000001_03506220_03510588 COQ10A coding upstream 98531 3506220 ~ 3510660 (+)
CI01000001_03482362_03485979 TMED4.S, TMED4 coding upstream 121938 3482362 ~ 3487253 (+)
CI01000001_03306094_03325686 NA coding upstream 281642 3305894 ~ 3327549 (+)
CI01000001_03200059_03206898 NA coding upstream 402195 3199969 ~ 3206996 (+)
CI01000001_03618075_03620436 NA coding downstream 2659 3618075 ~ 3621451 (+)
CI01000001_03638240_03647295 POU6F1 coding downstream 22824 3638240 ~ 3647680 (+)
CI01000001_03650790_03662852 LSF, TFCP2, TFCP2.L coding downstream 35220 3650636 ~ 3662944 (+)
CI01000001_03669438_03673748 CSRNP2 coding downstream 53309 3668725 ~ 3673787 (+)
CI01000001_03719251_03775929 ITGA5 coding downstream 102774 3718190 ~ 3776425 (+)
G14856 NA non-coding upstream 25149 3583116 ~ 3584042 (+)
G14836 NA non-coding upstream 59033 3548776 ~ 3550158 (+)
G14741 NA non-coding upstream 73968 3531198 ~ 3535223 (+)
G14733 NA non-coding upstream 78481 3516800 ~ 3530710 (+)
G14743 NA non-coding upstream 129334 3476585 ~ 3479857 (+)
G14842 NA non-coding downstream 6162 3621578 ~ 3624630 (+)
G14873 NA non-coding downstream 17677 3633093 ~ 3633583 (+)
G14874 NA non-coding downstream 21439 3636855 ~ 3695392 (+)
G14878 NA non-coding downstream 67906 3683322 ~ 3684468 (+)
G14911 NA non-coding downstream 225727 3841143 ~ 3841354 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 1938187 1667762 ~ 1671167 (+)
G13051 NA other upstream 2564039 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3117134 483853 ~ 488825 (+)
G12614 NA other upstream 3298250 309144 ~ 310941 (+)
G15794 NA other downstream 1445802 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1671333 5279837 ~ 5287698 (+)
G15995 NA other downstream 2096469 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3917156 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location