Gene
RNA
| Item | Value |
|---|---|
| gene id | G14733 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 3516800 ~ 3530710 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU16477 | True | 1333 | lncRNA | 0.38 | 10 | 3516800 | 3530710 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_03506220_03510588 | COQ10A | coding | upstream | 6140 | 3506220 ~ 3510660 (+) |
| CI01000001_03482362_03485979 | TMED4.S, TMED4 | coding | upstream | 29547 | 3482362 ~ 3487253 (+) |
| CI01000001_03306094_03325686 | NA | coding | upstream | 189251 | 3305894 ~ 3327549 (+) |
| CI01000001_03200059_03206898 | NA | coding | upstream | 309804 | 3199969 ~ 3206996 (+) |
| CI01000001_03061892_03081206 | NA | coding | upstream | 435591 | 3060940 ~ 3081209 (+) |
| CI01000001_03593892_03602210 | RACGAP1 | coding | downstream | 63182 | 3593892 ~ 3602260 (+) |
| CI01000001_03609191_03615121 | NA | coding | downstream | 78481 | 3609191 ~ 3615416 (+) |
| CI01000001_03618075_03620436 | NA | coding | downstream | 87365 | 3618075 ~ 3621451 (+) |
| CI01000001_03638240_03647295 | POU6F1 | coding | downstream | 107530 | 3638240 ~ 3647680 (+) |
| CI01000001_03650790_03662852 | LSF, TFCP2, TFCP2.L | coding | downstream | 119926 | 3650636 ~ 3662944 (+) |
| G14743 | NA | non-coding | upstream | 36943 | 3476585 ~ 3479857 (+) |
| G14731 | NA | non-coding | upstream | 59897 | 3428794 ~ 3456903 (+) |
| G14777 | NA | non-coding | upstream | 141137 | 3375412 ~ 3375663 (+) |
| G14775 | NA | non-coding | upstream | 141792 | 3374675 ~ 3375008 (+) |
| G14770 | NA | non-coding | upstream | 146913 | 3369684 ~ 3369887 (+) |
| G14741 | NA | non-coding | downstream | 488 | 3531198 ~ 3535223 (+) |
| G14836 | NA | non-coding | downstream | 18066 | 3548776 ~ 3550158 (+) |
| G14856 | NA | non-coding | downstream | 52406 | 3583116 ~ 3584042 (+) |
| G14842 | NA | non-coding | downstream | 90868 | 3621578 ~ 3624630 (+) |
| G14873 | NA | non-coding | downstream | 102383 | 3633093 ~ 3633583 (+) |
| CI01000001_01668334_01670035 | CAMK2N1B | other | upstream | 1845796 | 1667762 ~ 1671167 (+) |
| G13051 | NA | other | upstream | 2471648 | 1043713 ~ 1045152 (+) |
| CI01000001_00483853_00488761 | VWA1 | other | upstream | 3024743 | 483853 ~ 488825 (+) |
| G12614 | NA | other | upstream | 3205859 | 309144 ~ 310941 (+) |
| G15794 | NA | other | downstream | 1530508 | 5061218 ~ 5064704 (+) |
| CI01000001_05279884_05287123 | NA | other | downstream | 1756039 | 5279837 ~ 5287698 (+) |
| G15995 | NA | other | downstream | 2181175 | 5711885 ~ 5714951 (+) |
| CI01000001_07531945_07539781 | NA | other | downstream | 4001862 | 7531541 ~ 7540586 (+) |
