XLOC_021813 (si:dkey-261h17.1)


Basic Information

Item Value
gene id XLOC_021813
gene name si:dkey-261h17.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32499916 ~ 32532612 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043263
AGAGAAGGACGACGgtttgagagagagaaagagagagagatgtgggGGGAGTGGAGCGGGGCCATATAAAACCCCTGGAGCACAAGCCATGCTTTATCCTGTGACCCGCTCAATTCTGTCTCAAGCACAGGAAACCCCTAAACTCTACGAGCCCTGCCCcagcgcctgcacacacacactctcacacacctCAGCGCGCTCATAGAGGAGAATGGCTGTGCGAAGAATGAATGAGCTCTGGAAATCCATGCCTCTGGCTTTAATGTTCGGCTTGCTTTTACTGCACGGTTGTCAAGGACAAGATGAAGCAGGTGCATCAACTACTTCACAATCAGTTGGAGCAGAAACAAAtccaacaacagcagcagcaatgATAGCAGATGTACAGGGAACAGAACAGCCAGCAACTTCAGGATTAGAAACACAGTCAAATTATACATTATCCGGTACAGCTGTCACAAACCAAGAAATAATTGAAAAGACTACTAACAGCAGTCTAATGCCTCAACAAGGAAACATAAACCCAACCACAGTGAACCCCACCCCAGAACGAAAAAACAACATCACTGATGACAGCAAAGGTGGCCGTGGGGTtatatctgaccaatcagaaacctCTATCAATGAAACAGTAAAAGTGATTAACTTTGATGGCAAACAGGAAACAAGCAAAGAATCCGGATCTTCAGATGCTAAAGCTAAAGCAGACAAGGATACCACCTCCGGGGGTTCATCTTCTGCTGTTTTTGTATCTGTGCTATTGACTGGCTTACTGCTTGCTGGTATAATAGTTGGCATTTACTACTTCAAATGTCATCGCCGAACCAACGGTAAAGGCATGAAACTGGCTGAAGAGTCATACACGGCAGATGAGGAGAACCAAGGCAATACTCTTGTATCGGTGGCCCCACTGAACCAACCTGAGCCCCAGGAGAAACCCAGTCTTAACGGCGAGTCGCAAGAGGCAGTGAAGCCCCAGACTCCTCCTGCCGCCACCAATGGCCACTCCACAACCAAGACGGCAGACACTGAGCTGTGAATGAGCTGTTCTGCCACCCAGGGTCTGGGTTAAACACTCACTCCCTGCCCCTTACACCCAAAACAATCTTCTGCATACTGATCTTGGCCATCAAGGGTTAAGAAAGACTCAAATTCCCACAATGAATGTAAATACTTTGCAAAATGTTCCACTTAAAGTCATACGAAACGATAGGCAAGACTAAAATATGGAATATAACTATATAGGATGAAAATGGGATGAAATAATTGGTCAATAACCTGCTCCCTAAGCGTACCTGCTTTAATGATCTATGAAAAGGTTGTAATGCTTtataaaaaatgcaatttttaggTAGCTAGTATAGCTTCtggatttagtggttaattcgtattcATTTGTATGAtttaattcgtacattttagtaccataagcttatcccccaatgagggGTAGGGTTTGGTGCCAAGCCTCCCTTTAAAACAGAATGAAATCGTATAAAGTTccacgaattagccacttttctggcgtaaaatagttacgttttatTGTGAGATTGGACTAATTATAAATGTAGCTGTAAACAAGCAGCTATGACCGTGATGATACATGATATTATAGAAATTTTATCAAAACTCGATGCAAAAAAAAGGTATTAGTCCCATGA

Function

symbol description
si:dkey-261h17.1 Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; margin; musculature system; olfactory placode; and pharyngeal arch. Orthologous to human CD34 (CD34 molecule).

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030829-14 Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; margin; musculature system; olfactory placode; and pharyngeal arch. Orthologous to human CD34 (CD34 molecule).

Ensembl:

ensembl_id ENSDARG00000095268

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043263 True 1664 mRNA 0.43 4 32499916 32532612

Neighbor

gene id symbol gene type direction distance location
XLOC_021812 NA coding upstream 12190 32480330 ~ 32487726 (+)
XLOC_021811 si:ch211-66i15.5 coding upstream 64983 32426954 ~ 32434933 (+)
XLOC_021809 taf8 coding upstream 76568 32392461 ~ 32423348 (+)
XLOC_021810 si:ch211-66i15.5 coding upstream 89988 32406009 ~ 32409928 (+)
XLOC_021808 slc39a5 coding upstream 147737 32335871 ~ 32352179 (+)
XLOC_021814 NA coding downstream 29998 32562610 ~ 32562814 (+)
XLOC_021815 NA coding downstream 44438 32577050 ~ 32579434 (+)
XLOC_021816 AL928610.1 coding downstream 586398 33119010 ~ 33119124 (+)
XLOC_021817 dre-mir-205 coding downstream 757661 33290273 ~ 33290361 (+)
XLOC_021818 si:ch211-226m16.3 coding downstream 762021 33294633 ~ 33309622 (+)
XLOC_021807 NA non-coding upstream 246839 32250356 ~ 32253077 (+)
XLOC_021806 NA non-coding upstream 286556 32210258 ~ 32213360 (+)
XLOC_021805 CU041363.1 non-coding upstream 298422 32194408 ~ 32201494 (+)
XLOC_021795 NA non-coding upstream 614003 31863739 ~ 31885913 (+)
XLOC_021820 NA non-coding downstream 922951 33455563 ~ 33459265 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_04311013_04315588 NA coding CI01000001 null 4311013 ~ 4315765 (+)