XLOC_021808 (slc39a5)


Basic Information

Item Value
gene id XLOC_021808
gene name slc39a5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32335871 ~ 32352179 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043250
AAACACTAGGATACTACGAGGAAACTGGAGATCATGTAACAGGCTTAAGAGACCGCAGAAAATCATGGGTGGACAGACAGTCTGGATGACTCTGAGCTTCAAGCTTCTGCTCTACTACTGTATGATATCTTTGTTAATGCCAGCCATCTTCATACTGGCTACACGTGCCCAGGTCGACAAGTTCAGAAAGTTTAATGAGAGTACACAAACCAAATCTTCACAGGAACTCTTTGAGGAAGCATTTGAAGAGCAGGGCTACTACTTGCAACGTCTGTTCCTTCAGTATGGAGACAATGGGACTTTGACATATGAGGGTCTACAGAAGCTGCTTGGTAGTTTGGGTTTGGGAGAAGTCAGTGTCCTGGAGATTCGACATGGTGAAGCAAAACATCCTTCTCAATCGATATCCCATTCCCACTCACATGAAGACCATCACCCTTCTCAAGGGACTACAAACTCACCTCCACTCAGAGAAAGTCTGGATGCTAAATCAGCGCTCAGTGGCTCTCCGGCAGAATTGGGTCGCTCAGACTATTTTCTACACCCCGCTCTAAGAAACAAACAGGAGGAAAGTGTGTCACTGCTATCTGACCATCCGACAGAGAAACACCTTCATGGCAATTGTCTGAATGTGACCCAGCTCCTCTGGAACTTCGGGCTTGGCCAGGCGTCCCACATCACTCCTGCCCACTTCACCTTCCTGTGCCCTGCCCTCCTGTACCAGATCGAGAGCGGAGTGTGTCTGCGGCACACAGAAGATCATTCACAGGCCAGCAAAACCAGCGAGGGCTTCctcatagCTCTAGGATGGGCATCATTGGCGCTCCTGGTCATCAGCCTGCCCTCTCTGGTTGCTCTGGGAATGGCACCGCTGCTTCAGCCTTCTGTACTTCAAGTGTTTCTCTGCCCGATGGCTGGCATGGCGGTGGGCACGCTCTGTGGAGATGCCCTTCTGCACCTCATGCCTCATGCCATCTTCAGTCAACACACTGATCACCAGAATGCTGTTTTCAAAGGTCTCAGTGTTCTGGGAGGACTTTACCTTCTCTTCATCTTTGAGAGTCTTCTGGGACTTAAGCAGCATTTCAAGAATTTAAAGAGAAGAAAGCATGACGCAGAGTGTGGAAGAGAGCTTGACGCACTACAGGGAacctcatcagccaatcagaatgagaGTTCAGGGCACGGTCATTCCCATGGACAGGCTGAACCAGGGCAAACTGGTATCAGAAGCATGGCATGGATGGTGGTGATGGGTGATGGCATACATAACCTGACAGATGGACTTGCCATTGGTGTCGCGTTTTCCCAGAGTTTGACTGGCGGCTTCAGCACCGCGATCGCCGTGTTCTGCCACGAGCTTCCTCATGAACTAGGTGATTTGGCGGTGTTGTTGTCTGCGGGCTGGCCTGTGCGCAGGCTGCTGGTGTTCAGCGGGCTCTCTGCTCTGCTGGGTTTTGTGGGTGTTTTGGCCGGATCTGCGCTGGGGAACCACTGGGCTTCACACTCACCCTGGATCCTCACACTCACCGCCGGTGTCTTCCTCTATGTAGCTCTTGCTGACATGATGCCGGAGATGCTGCACGGAGCCTGTGGATCAGTGAGTCCGCTGAAGCGCTTCCTCCTGCAGGCTCTCGGCCTGCTGACAGGGGGCGCCATCATGCTGTGCATCGCGCTCTTCGAGGATCACATCGCTGTCAGTCTGGGAGAAAACAGTCTGGGAGAAAACTAACAACATGATGAAGATCATCTAAATCAAAGACACAAGCATTTTCGAGTACCTCATCCATTATATCAACTACTGTGTAGATGtggatattctgaagaaagttcCCCGGATGATGGATTTGCTATTGTAACTGCAACAAAGATTTATAGGTAGTCATTATTTTTGAACATCCACTTCCTAACGtgtttataaagaaaaaaaactagcctataaGGTGAATGCTGTGTTTTCAGTTTGTCTTTCATTTATCatataaatgtttctcaacataaacattagtttatttatgaTGTTGAAGACGGTTGTTAAATGATAACGTCGTCACTGTTTACATTTGTACTATTAATATATAATGCCCTTCCCTTGTTTGTTTGTAGACTAGGCCTATAACTTCATAGCCTTTTTagaattttatattgttaaataaaatcacaattaCCTCCaggtattaaaatgtaaaaacacagagaaactgTTTTAAAGAACTTTGCACAGTAAATAAAAACCTCTATATTTTCCTTGC

Function

symbol description
slc39a5 Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in BMP signaling pathway; cellular zinc ion homeostasis; and zinc ion import across plasma membrane. Predicted to act upstream of or within metal ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in myopia. Orthologous to human SLC39A5 (solute carrier family 39 member 5).

GO:

id name namespace
GO:0006882 cellular zinc ion homeostasis biological_process
GO:0071578 zinc ion import across plasma membrane biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0055085 transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-060608-1 Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in BMP signaling pathway; cellular zinc ion homeostasis; and zinc ion import across plasma membrane. Predicted to act upstream of or within metal ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in myopia. Orthologous to human SLC39A5 (solute carrier family 39 member 5).

Ensembl:

ensembl_id ENSDARG00000079525

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043250 True 2252 mRNA 0.47 12 32335871 32352179

Neighbor

gene id symbol gene type direction distance location
XLOC_021807 NA coding upstream 82794 32250356 ~ 32253077 (+)
XLOC_021806 NA coding upstream 122511 32210258 ~ 32213360 (+)
XLOC_021805 CU041363.1 coding upstream 134377 32194408 ~ 32201494 (+)
XLOC_021804 zgc:56699 coding upstream 228263 32101202 ~ 32107608 (+)
XLOC_021803 cd63 coding upstream 249932 32066168 ~ 32085939 (+)
XLOC_021809 taf8 coding downstream 40282 32392461 ~ 32423348 (+)
XLOC_021810 si:ch211-66i15.5 coding downstream 53830 32406009 ~ 32409928 (+)
XLOC_021811 si:ch211-66i15.5 coding downstream 74775 32426954 ~ 32434933 (+)
XLOC_021812 NA coding downstream 128151 32480330 ~ 32487726 (+)
XLOC_021813 si:dkey-261h17.1 coding downstream 147737 32499916 ~ 32532612 (+)
XLOC_021795 NA non-coding upstream 449958 31863739 ~ 31885913 (+)
XLOC_021793 BX927365.3 non-coding upstream 668328 31667429 ~ 31667543 (+)
XLOC_021814 NA non-coding downstream 210431 32562610 ~ 32562814 (+)
XLOC_021815 NA non-coding downstream 224871 32577050 ~ 32579434 (+)
XLOC_021816 AL928610.1 non-coding downstream 766831 33119010 ~ 33119124 (+)
XLOC_021817 dre-mir-205 non-coding downstream 938094 33290273 ~ 33290361 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_13470823_13478394 NA coding CI01000001 null 13470670 ~ 13478398 (+)