XLOC_021806


Basic Information

Item Value
gene id XLOC_021806
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32210258 ~ 32213360 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044852
tattttatctttattttatcattttcgaTCGCCCTCAGGAGAGTAAGTTACGATTGTAGTCCCAAAGACCAAGCTGCGGATCTAAAGGTAAAaaatacatagtttttttttttatttaacacacaAATTACAAATTTAGTACACACAGTCTTTCAAAAATTTGGGATCAGCAAGGATTGTAATTTTGTTTATAGAAGGATGCttcaattaatccaaaatacagaattaaataaatgctgaagtTAAAATAATGTGTTTCTTATTGActgaaaactaatttaattaaactgtttccaacaatgataataaattagcatttataatgatttctgaactATGGTGTGACACTTAAGACTAGAGTGATAATGTTGATAATTCAGCTTTCACATCGCATGAATAAATGATCgatttacatcaaaatataaatattactttaaatttcattaacatttcacaataatgcaactttctgtatttttattaaagtgaatgcagccttgatgagcaaAAAAAGCTAATATTGATCTCAAACGTTTGAACAACattaaaagatttataaataatataaattattattattacttttattgtaataaacttgGCTTACTGTAAAATTTTGGGATTTCTCAGTTAAAATGTTTATGGGTGAACACTCTTTCAGGTAAATTATTTCTACTTTTACAGAACTGGTTGCCTCGAGAATAAATACCACTTCTGCACCTATCGCTTAGGCCGTACAAACAGTAAATCACATTTGGGCCACACATGTTTTGAAGCAATTCTAAAAAATGCATTGAGGGATTTGGGAAGTAAAGGAATGGGTGAAAAAACTTAGTAAGTCTTGAGTTAGTTGGAGAGTGGCAGTGACAAAACCTAAAAAGGGACAATGTCAAATCAGTTCATTCTTTGttacactatataaatgtaacacaCTGAAAATAACTTTACAGTAAATATTGTAAACATACATAGTTCTACTgttcaaaacattttagattCTTCACACAAATTGagatgtttattaatatattttgattTAGTGTGCCAGTTAGAAATCTCAGTTAACATTGAATTGGTTAATGGTTTGTAATTGTCCAGTGAGATTTTTACCCTTGTGATGGCTCCAGTATTTGTATAAACTTAGGACAGGTCATATGGATAGATGACTGGATAGACAGATTTTCATATGCACAGCCACAGTGATTCTGAAATCATATAGTCTCAGCCTCAGACATCATGCCAAGCAACTTCTGATGCATATGGCACACTTTTCTGGAAACCTTTTTAAAGATCCTCAGTTGTCCTCTGATTAGTTTAAATATACATGATTTCTGTGAGTTGACAGACCACCTAGAAACAAGTCTGTGCAGATAAAATAGCTGCAATGGTTATATTGATGACAGTCCTTATTAATAAACATATAACTTTCTGAGACATTTAGTGATTTACTGCCTGCATGTCTGTGATGATGGgcatttattcatttgatttaaatgctaaataattaaaagtatccAATATTCACTGCATAAAAGCTTTAACTCACGATATTGACAAACTTGCTGGTAtgcttgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtatttttttctaatggcagtGTAAATCTTCAAATATTCTGTCATTTTGGTCATTAAGATAAGAGAATGACCATTCAAAGcagcaactgttttttttatttgtggatactcacaaaaacaacaaaaccttGCTTTTATAGAACAAAGTAAACTTTCACTCACTTATCTCATCTGAGGTGATCTTTAGgtaaaaatgcttcattaaaataatgaatgaatctgAGAACAAATGCTACATACATGTCCTACAGATTTCCTGTATGTTTTGTTGACAGATCATTTAGAATATTGCTGCATCATTGTTGTAAACGTTTGaaatttctaaatgtaaaataaaaatatctaacatttctgcacacttaaacatttaaacatttatatttttttctgtgggCTCACTAAAGGTGCCAGCACAATGTTCATGTTCGATCAGGCATGGCTTGTCAACAACGGCTGTCCAAAAATATGCTGTGGGGCAAAAAGGGTTTGCACTTTGGTAAAGACTGTAGACAAAAGGGGAGGATCAAGTAGGTGAGTTAGAAATGTCAAAATtgtactaatatttttttttaagtttctttgtgtaatttatttttatttttcaggaaCAATGATCCCCATATTCCCACTTACTCAACCTCTGTGCGCTTGTACAATGTGCATTGAGGCACAAGGTTGTAGGGGTCACTGTAGTTGCCACCACTGCAAGAGTTAACGCTGTTGAGATGCCACCATGTCAGAGCCTGAGCTGCCAGTTGCCACCAGAGCTATTGCTGCCACATGCACCAGAGTTACTGTCAACAGAAAAGCTCACAAAGCCTCAACCACATTCAGACCCATTCCAGCAAAACTGCCAGAGCCCGTGGTGCTAGAGCTGGCAGATCTGCTGCTGCCATAGCCAACGCTTCCAGAGCCACTGATGCCACCAACtaagctccaggattggccacctCTGCAAAAGCCAACTAGCCTATCAGAGCCACTCTACCTATTTCTAAAGTGAGGacaatttatgctttataaatgcctaataaatgacaattaaaggctcagtgtCAAATGAACAGTACATCTTTGTAAtcctatctaaaaaataaaattactgtaaagtttaaacattgcagaataacaggagtgtcaaaatacgacataaaattggataaaaaaacaacaacaatataataatttaacaatatattatgatacaacattATAATGTTATTTAGCGAAGTTTAAACTGTACGGTAActttattttagttaagattgcaaaaatgtatttttcatttgatacagatTCATTTATGTATCTTTAAATGATAAGAAATAAATCAAGTCGTGTTTTTTCCCCTGTTTAGAagataactgagcctttaatagttatttataagggatttataaagcataaatagtcctcac

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0009790 embryo development biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0043034 costamere cellular_component
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044852 True 3103 lncRNA 0.33 1 32210258 32213360

Neighbor

gene id symbol gene type direction distance location
XLOC_021805 CU041363.1 coding upstream 8764 32194408 ~ 32201494 (+)
XLOC_021804 zgc:56699 coding upstream 102650 32101202 ~ 32107608 (+)
XLOC_021803 cd63 coding upstream 124319 32066168 ~ 32085939 (+)
XLOC_021802 tpx2 coding upstream 149373 32028574 ~ 32060885 (+)
XLOC_021801 trappc6b coding upstream 183060 32021803 ~ 32027198 (+)
XLOC_021807 NA coding downstream 36996 32250356 ~ 32253077 (+)
XLOC_021808 slc39a5 coding downstream 122511 32335871 ~ 32352179 (+)
XLOC_021809 taf8 coding downstream 179101 32392461 ~ 32423348 (+)
XLOC_021810 si:ch211-66i15.5 coding downstream 192649 32406009 ~ 32409928 (+)
XLOC_021811 si:ch211-66i15.5 coding downstream 213594 32426954 ~ 32434933 (+)
XLOC_021795 NA non-coding upstream 324345 31863739 ~ 31885913 (+)
XLOC_021793 BX927365.3 non-coding upstream 542715 31667429 ~ 31667543 (+)
XLOC_021791 CR759830.2 non-coding upstream 776595 31433579 ~ 31433663 (+)
XLOC_021790 CR759830.1 non-coding upstream 776910 31433273 ~ 31433348 (+)
XLOC_021812 NA non-coding downstream 266970 32480330 ~ 32487726 (+)
XLOC_021814 NA non-coding downstream 349250 32562610 ~ 32562814 (+)
XLOC_021815 NA non-coding downstream 363690 32577050 ~ 32579434 (+)
XLOC_021816 AL928610.1 non-coding downstream 905650 33119010 ~ 33119124 (+)

Expression


Co-expression Network