XLOC_021807


Basic Information

Item Value
gene id XLOC_021807
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32250356 ~ 32253077 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044853
CTTTCCTAGATGAGGGAACACAAAACAGTAGGTACAATGGACGATCAAATCACAGTTTATCTGCATTTGATCTGCTTCTGTagtttatacattatttttaactatttaagcTGAGTTTTCTTTTACCAACTTGCTGATTTAAagctgtattttctttttttaactaactagtcatgttgttgtttgtatttagctttttaacagcctttttggctttttttttagagttttgcAGGCTAGTATAGCGTTTTTCAGTGGTTATTTATACTAAAGGCTGGCTAAAATGTTatcaattataaatataaatagttttttcaaatatttcctgagTTAtttataacagagcaaggacatttctcATAGTATTTccttcctattatatttttcttcaggagaaggTCTTACTTTTTTAGTCTgtgtgaaataaaacattttgtgaaatgatttgccaagttaagcctttaaacctaactttaagctgaatacagcATCTTGCAAAATAATTAGAAAGAAATATATTGTACTATCGTGAATCTGAATATAATGATTATCAggcactgtcatcatggaaaaaaaactaaataaattagttattgaaaGTATTATATGTAAAAATGCACTTgacttggcaaatatttaaaaaaaaaaaaaatccatgcttGTATATGTGCtgtacattattattactacatattagtactgaaattttaaagcaatacaattaagttttattttaaagttttgtgtaatttatagctgttttttttataatcacaacaACCCATATTTAGTCACGTCAACTTGCTGTTCCTTTTTACTTTTcaacatataaaaaacaaaataaaataataaaacaacatattGCTCATTTATAGTATCATGAAGCTGTCAACTTTGTCAACACAGTGCATAACAGgacatttatagatatatttgGAAATAAAAGTTTTCTATCTGATAGCAATGAAAGTACCATAAACTCTCTAGATTAATGTGTGCGTGTTTGGCGTATATTGCGTTCTGCAAAATACATatacatccacccatctatccatatGTGTGTACTTTGCTGTATACTGCATTTTGCTGTTTGCATTACCTTGACGACAGGATAAATTGCCCAAGGTGGTAAGATATGAACCTTGAAAGGGCCACAATCACATGTAAATGGCTCCTGGGTTGCACATGCATCATGTCTCTAAAAcatcagaaaagaaaaaaaggaaaaaaatccagttatcaaaaaaaaaaaaagtaaaaaaaatggagGTTTGATTACATTTGATATTGAGAGTgatattttatcaaaattgactCATAagctcatttaattttttaaccaACAGTTGCGGAGTACACTGTAATCTGttattttataacagtttttaGTAAGTGCGCAGCAGTCCCAGTCCTAATCTCACCATGGTGTGACACCACACACAGCGCTTCCCGGTAAGACCGTGCAAACTCTTGATCTTCTTCTGACACCCGTCACACTTCCCAGAATCACAGTTTCCACTCACCCAGTCATGGACTGCGATCTGTTTGCAAAAACAAATGAGATGCGCATATGCTGTTTACATTTCCAGTATCCATTTGATGGCAGTTCCATAAACTAAAACTTATATAATAAGATATACAATAGATGACCTTAGTGaaacacacacaatacaaaaCCTGCAATCATCTCAcaacaaaataaagatttttgggaatacagtgctcggcataattgagtacagcccaatttgaaaatgaatatttgtatccatttctcagtgaatatagtcagtgtattttggtgcaataaaacaaaacagattattaaacaaatgtatttattaaaatacaattttagtcaccaaacatatttagaaattgaaagataatactattaaattcaagctaagcattgcaaaataaaattacaacctacaaaatttcaactatttttgttttgcttctcttgatttttcctctttttaaaatttgtatttaatatttttcataagATATATATTTGgttgtactagtttttgaactGTTAACGTAAataattttgttagataagctccagatttggcttcagtactgactaatctaatgtgtatgcacaaatacaatattgtatagcttcctattaaaatatgaatttaaaagagggatttgtgaggggtgtacttatatatgctgagcactgtagatgTAGTTATATTTTGCAATGTTTATATGTGTAATGTTCATTCATCTGATTTCCTTTTTTATTCTGATTCCATAGCTGTTAGTTTTATTCCTACAAAGGTGTTTACTTTATATGCAAAGCTATAAATACAGTTACATGGTGTtagtgttttatttgatttttatttattttttgatatgtaATTTAAGATTTTAAGTGAAATGACGTGCTTACCCCCGTCTCCTTCTTTGACATCACATACGTGCGAGTGCATGGAGCTGGATTTTTATTGGCACATCGGCCATGGACTGTGTATCTGCAGCCTGTGTATGATAGCAAACGGTTGTGATATCAAAATCAGCAGAAGTTCCCAAAATAGACTGACAACCTTGTTGCATAAACTAGAAGGATATCTTGAAAAGGTATGTATTTTAATCACTAAAATTAACCTTTTTAAACTGACAGATTGCAGAAATTACATTTGGCCAAACAATCTGTTAACCTTTGCTGTGAATTACCCAGAATTCCACTCACAGGTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044853 True 2722 lncRNA 0.31 1 32250356 32253077

Neighbor

gene id symbol gene type direction distance location
XLOC_021806 NA coding upstream 36996 32210258 ~ 32213360 (+)
XLOC_021805 CU041363.1 coding upstream 48862 32194408 ~ 32201494 (+)
XLOC_021804 zgc:56699 coding upstream 142748 32101202 ~ 32107608 (+)
XLOC_021803 cd63 coding upstream 164417 32066168 ~ 32085939 (+)
XLOC_021802 tpx2 coding upstream 189471 32028574 ~ 32060885 (+)
XLOC_021808 slc39a5 coding downstream 82794 32335871 ~ 32352179 (+)
XLOC_021809 taf8 coding downstream 139384 32392461 ~ 32423348 (+)
XLOC_021810 si:ch211-66i15.5 coding downstream 152932 32406009 ~ 32409928 (+)
XLOC_021811 si:ch211-66i15.5 coding downstream 173877 32426954 ~ 32434933 (+)
XLOC_021812 NA coding downstream 227253 32480330 ~ 32487726 (+)
XLOC_021795 NA non-coding upstream 364443 31863739 ~ 31885913 (+)
XLOC_021793 BX927365.3 non-coding upstream 582813 31667429 ~ 31667543 (+)
XLOC_021791 CR759830.2 non-coding upstream 816693 31433579 ~ 31433663 (+)
XLOC_021814 NA non-coding downstream 309533 32562610 ~ 32562814 (+)
XLOC_021815 NA non-coding downstream 323973 32577050 ~ 32579434 (+)
XLOC_021816 AL928610.1 non-coding downstream 865933 33119010 ~ 33119124 (+)
XLOC_021817 dre-mir-205 non-coding downstream 1037196 33290273 ~ 33290361 (+)

Expression


Co-expression Network