RNA id: TCONS_00044853


Basic Information

Item Value
RNA id TCONS_00044853
length 2722
lncRNA type antisense_over
GC content 0.31
exon number 1
gene id XLOC_021807
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32250356 ~ 32253077 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCCTAGATGAGGGAACACAAAACAGTAGGTACAATGGACGATCAAATCACAGTTTATCTGCATTTGATCTGCTTCTGTagtttatacattatttttaactatttaagcTGAGTTTTCTTTTACCAACTTGCTGATTTAAagctgtattttctttttttaactaactagtcatgttgttgtttgtatttagctttttaacagcctttttggctttttttttagagttttgcAGGCTAGTATAGCGTTTTTCAGTGGTTATTTATACTAAAGGCTGGCTAAAATGTTatcaattataaatataaatagttttttcaaatatttcctgagTTAtttataacagagcaaggacatttctcATAGTATTTccttcctattatatttttcttcaggagaaggTCTTACTTTTTTAGTCTgtgtgaaataaaacattttgtgaaatgatttgccaagttaagcctttaaacctaactttaagctgaatacagcATCTTGCAAAATAATTAGAAAGAAATATATTGTACTATCGTGAATCTGAATATAATGATTATCAggcactgtcatcatggaaaaaaaactaaataaattagttattgaaaGTATTATATGTAAAAATGCACTTgacttggcaaatatttaaaaaaaaaaaaaatccatgcttGTATATGTGCtgtacattattattactacatattagtactgaaattttaaagcaatacaattaagttttattttaaagttttgtgtaatttatagctgttttttttataatcacaacaACCCATATTTAGTCACGTCAACTTGCTGTTCCTTTTTACTTTTcaacatataaaaaacaaaataaaataataaaacaacatattGCTCATTTATAGTATCATGAAGCTGTCAACTTTGTCAACACAGTGCATAACAGgacatttatagatatatttgGAAATAAAAGTTTTCTATCTGATAGCAATGAAAGTACCATAAACTCTCTAGATTAATGTGTGCGTGTTTGGCGTATATTGCGTTCTGCAAAATACATatacatccacccatctatccatatGTGTGTACTTTGCTGTATACTGCATTTTGCTGTTTGCATTACCTTGACGACAGGATAAATTGCCCAAGGTGGTAAGATATGAACCTTGAAAGGGCCACAATCACATGTAAATGGCTCCTGGGTTGCACATGCATCATGTCTCTAAAAcatcagaaaagaaaaaaaggaaaaaaatccagttatcaaaaaaaaaaaaagtaaaaaaaatggagGTTTGATTACATTTGATATTGAGAGTgatattttatcaaaattgactCATAagctcatttaattttttaaccaACAGTTGCGGAGTACACTGTAATCTGttattttataacagtttttaGTAAGTGCGCAGCAGTCCCAGTCCTAATCTCACCATGGTGTGACACCACACACAGCGCTTCCCGGTAAGACCGTGCAAACTCTTGATCTTCTTCTGACACCCGTCACACTTCCCAGAATCACAGTTTCCACTCACCCAGTCATGGACTGCGATCTGTTTGCAAAAACAAATGAGATGCGCATATGCTGTTTACATTTCCAGTATCCATTTGATGGCAGTTCCATAAACTAAAACTTATATAATAAGATATACAATAGATGACCTTAGTGaaacacacacaatacaaaaCCTGCAATCATCTCAcaacaaaataaagatttttgggaatacagtgctcggcataattgagtacagcccaatttgaaaatgaatatttgtatccatttctcagtgaatatagtcagtgtattttggtgcaataaaacaaaacagattattaaacaaatgtatttattaaaatacaattttagtcaccaaacatatttagaaattgaaagataatactattaaattcaagctaagcattgcaaaataaaattacaacctacaaaatttcaactatttttgttttgcttctcttgatttttcctctttttaaaatttgtatttaatatttttcataagATATATATTTGgttgtactagtttttgaactGTTAACGTAAataattttgttagataagctccagatttggcttcagtactgactaatctaatgtgtatgcacaaatacaatattgtatagcttcctattaaaatatgaatttaaaagagggatttgtgaggggtgtacttatatatgctgagcactgtagatgTAGTTATATTTTGCAATGTTTATATGTGTAATGTTCATTCATCTGATTTCCTTTTTTATTCTGATTCCATAGCTGTTAGTTTTATTCCTACAAAGGTGTTTACTTTATATGCAAAGCTATAAATACAGTTACATGGTGTtagtgttttatttgatttttatttattttttgatatgtaATTTAAGATTTTAAGTGAAATGACGTGCTTACCCCCGTCTCCTTCTTTGACATCACATACGTGCGAGTGCATGGAGCTGGATTTTTATTGGCACATCGGCCATGGACTGTGTATCTGCAGCCTGTGTATGATAGCAAACGGTTGTGATATCAAAATCAGCAGAAGTTCCCAAAATAGACTGACAACCTTGTTGCATAAACTAGAAGGATATCTTGAAAAGGTATGTATTTTAATCACTAAAATTAACCTTTTTAAACTGACAGATTGCAGAAATTACATTTGGCCAAACAATCTGTTAACCTTTGCTGTGAATTACCCAGAATTCCACTCACAGGTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044852 lncRNA upstream 36996 32210258 ~ 32213360 (+) True XLOC_021806
TCONS_00043249 lncRNA upstream 48862 32194408 ~ 32201494 (+) True XLOC_021805
TCONS_00043238 lncRNA upstream 212137 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00043241 lncRNA upstream 212137 32034741 ~ 32038219 (+) False XLOC_021802
TCONS_00043242 lncRNA upstream 212296 32037087 ~ 32038060 (+) False XLOC_021802
TCONS_00044854 lncRNA downstream 139416 32392493 ~ 32418824 (+) False XLOC_021809
TCONS_00043252 lncRNA downstream 139443 32392520 ~ 32397844 (+) False XLOC_021809
TCONS_00043257 lncRNA downstream 153279 32406356 ~ 32409927 (+) False XLOC_021810
TCONS_00044855 lncRNA downstream 227253 32480330 ~ 32487726 (+) True XLOC_021812
TCONS_00044677 lncRNA downstream 309533 32562610 ~ 32562814 (+) True XLOC_021814
TCONS_00043248 mRNA upstream 142748 32101361 ~ 32107608 (+) True XLOC_021804
TCONS_00043246 mRNA upstream 142897 32101202 ~ 32107459 (+) False XLOC_021804
TCONS_00043245 mRNA upstream 164417 32066168 ~ 32085939 (+) True XLOC_021803
TCONS_00043244 mRNA upstream 189471 32044410 ~ 32060885 (+) True XLOC_021802
TCONS_00043243 mRNA upstream 189473 32039386 ~ 32060883 (+) False XLOC_021802
TCONS_00043250 mRNA downstream 82794 32335871 ~ 32352179 (+) True XLOC_021808
TCONS_00043251 mRNA downstream 139384 32392461 ~ 32400994 (+) False XLOC_021809
TCONS_00043253 mRNA downstream 139465 32392542 ~ 32421886 (+) False XLOC_021809
TCONS_00043255 mRNA downstream 139535 32392612 ~ 32423348 (+) False XLOC_021809
TCONS_00043254 mRNA downstream 139535 32392612 ~ 32423348 (+) False XLOC_021809
TCONS_00043247 other upstream 142875 32101211 ~ 32107481 (+) False XLOC_021804
TCONS_00043240 other upstream 212137 32032765 ~ 32038219 (+) False XLOC_021802
TCONS_00043229 other upstream 309482 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043223 other upstream 582813 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043220 other upstream 816693 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043259 other downstream 154118 32407195 ~ 32409927 (+) True XLOC_021810
TCONS_00043260 other downstream 159457 32412534 ~ 32421750 (+) True XLOC_021809
TCONS_00043264 other downstream 865933 33119010 ~ 33119124 (+) True XLOC_021816
TCONS_00043265 other downstream 1037196 33290273 ~ 33290361 (+) True XLOC_021817
TCONS_00043266 other downstream 1041556 33294633 ~ 33309585 (+) False XLOC_021818

Expression Profile

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