XLOC_021797 (si:dkey-126g1.9)


Basic Information

Item Value
gene id XLOC_021797
gene name si:dkey-126g1.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31933583 ~ 31940912 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043228
AGAGCTGGACTTCAGCCAGACACAAACAGGAGGATGTGCGTATGAAGTCCTGAGCCCCAGAACATCAGTCAGAGCAAAGCAAAGTAAAGCACACTCCTGAAGGAGACCATGAAGCCCAAGTCTCTCTGCGTCCCGCGGTTTGGCCTGTTTGAGGAGTGCAGATACCGGCGGCAGGTCGATGCAGCCGCGCCGGAGCAGAGTGTCGATCAGCCGgcggagaagaagaagaaaaagaagaagaagagtcCCAGAGAGCCGCAGTTTACAGCCCTGACCGAGAGATCACCTTACGAGCTCTTGCTGGAGGACGACAGCCAGCACACACTGAAGGAGGACAAGAAAGTGAAGAAGAAGGAAAAGTACAAGAAATACAAAAAGAACGTTGGAAAGGCTCTTCGCTACAGTTGGAAATGTCTGATGTTGGGTCTGCAGAACTTCACCGTTGGATATTCCACCCCTTTCTCCACCGCTTCCTCCATCATTCCAGATTTCCACCCTGGAGGAGCCTGGGGTTGAGGCCAGCATTTGATCCTCCTTAAAATCATCCAAAACCTTCATATTTGGACCAGTCGATGCTACACATACAGATGCTGCTTTACAAACGGACCAAACGTCTGCCTGAGCAACTCCAGCTCTCGTGCTGTAAACTGTTGTAAATATCCGCAACTGAAAATCTACAGCTATAAGGAAGATGTATGTCTTTTTATACCCAGTTCTATCTGTGTATATTTGCTCAGAATTTATATGAATTTCTGTATCGATAATGAATCATTCTTGTATACTGAACTAATAtgcaactgtccctttaattgatTCTGCAATTATTTTATGCATAGGCTGAAGGTTGTGATTGATTCACGTTAAAAGAGAGGCTTTGCTTGATTAAGAGATGACTTTGAATGTTTTTAGAGAGGAAAgtattagtttgttttttaaaaatgtaattatgggATACTTCGGATGTATTAATGAGAACGATAACAGGAAAAGATGATCAGAGAAACGACGGCGACTTATTTGAGGGAGTCAGTGAAGCTGAGTAACTTGCTTAATACACCTGCTTAAAGTTAGTTCCAAGACAAGAAATgtgattaaaatgaataa
>TCONS_00043229
ACTCCTGAAGGAGACCATGAAGCCCAAGTCTCTCTGCGTCCCGCGGTTTGGCCTGTTTGAGGAGTGCAGATACCGGCGGCAGGTCGATGCAGCCGCGCCGGAGCAGAGTGTCGATCAGCCGgcggagaagaagaagaaaaagaagaagaagagtcCCAGAGAGCCGCAGTTTACAGCCCTGACCGAGAGATCACCTTACGAGCTCTTGCTGGAGGACGACAGCCAGCACACACTGAAGGAGGACAAGAAAGTGAAGAAGAAGGAAAAGTACAAGAAATACAAAAAGGAAAGGCTCTTCGCTACAGTTGGAAATGTCTGATGTTGGGTCTGCAGAACTTCACCGTTGGATATTCCACCCCTTTCTCCACCGCTTCCTCCATCATTCCAGATTTCCACCCTGGAGGAGCCTGGGGTTGAGGCCAGCATTTGATCCTCCTTAAAATCATCCAAAACCTTCATATTTGGACCAGTCGATGCTACACATACAGATGCTGCTTTACAAACGGACCAAACGTCTGCCTGAGCAACTCCAGCTCTCGTGCTGTAAACTGTTGTAAATATCCGCAACTGAAAATCTACAGCTATAAGGAAGATGTATGTCTTTTTATACCCAGTTCTATCTGTGTATATTTGCTCAGAATTTATATGAATTTCTGTATCGATAATGAATCATTCTTGTATACTGAACTAATAtgcaactgtccctttaattgatTCTGCAATTATTTTATGCATAGGCTGAAGGTTGTGATTGATTCACGTTAAAAGAGAGGCTTTGCTTGATTAAGAGATGACTTTGAATGTTTTTAGAGAGGAAAgtattagtttgttttttaaaaatgtaattatgggATACTTCGGATGTATTAATGAGAACGATAACAGGAAAAGATGATCAGAGAAACGACGGCGACTTATTTGAGGGAGTCAGTGAAGCTGAGTAACTTGCTTAATACACCTGCTTAAA

Function

symbol description
si:dkey-126g1.9 Is expressed in yolk syncytial layer. Orthologous to human C1orf115 (chromosome 1 open reading frame 115).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9862 Is expressed in yolk syncytial layer. Orthologous to human C1orf115 (chromosome 1 open reading frame 115).

Ensembl:

ensembl_id ENSDARG00000093702

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043228 False 1104 mRNA 0.43 2 31933583 31940912
TCONS_00043229 True 967 processed_transcript 0.43 2 31933675 31940874

Neighbor

gene id symbol gene type direction distance location
XLOC_021796 armc1l coding upstream 14428 31912882 ~ 31919155 (+)
XLOC_021795 NA coding upstream 47670 31863739 ~ 31885913 (+)
XLOC_021794 myb coding upstream 103540 31815423 ~ 31830043 (+)
XLOC_021793 BX927365.3 coding upstream 266040 31667429 ~ 31667543 (+)
XLOC_021792 tbpl1 coding upstream 327991 31596194 ~ 31605592 (+)
XLOC_021798 nemp1 coding downstream 1128 31942040 ~ 31953643 (+)
XLOC_021799 pan2 coding downstream 38690 31979602 ~ 32007818 (+)
XLOC_021800 plagx coding downstream 70856 32011768 ~ 32020198 (+)
XLOC_021801 trappc6b coding downstream 80891 32021803 ~ 32027198 (+)
XLOC_021802 tpx2 coding downstream 87662 32028574 ~ 32060885 (+)
XLOC_021791 CR759830.2 non-coding upstream 499920 31433579 ~ 31433663 (+)
XLOC_021790 CR759830.1 non-coding upstream 500235 31433273 ~ 31433348 (+)
XLOC_021785 NA non-coding upstream 847632 31078564 ~ 31085951 (+)
XLOC_021805 CU041363.1 non-coding downstream 253496 32194408 ~ 32201494 (+)
XLOC_021806 NA non-coding downstream 269346 32210258 ~ 32213360 (+)
XLOC_021807 NA non-coding downstream 309444 32250356 ~ 32253077 (+)
XLOC_021812 NA non-coding downstream 539418 32480330 ~ 32487726 (+)
XLOC_021814 NA non-coding downstream 621698 32562610 ~ 32562814 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_13235608_13240350 NA coding CI01000001 null 13235608 ~ 13240441 (+)