CI01000001_13235608_13240350


Basic Information

Item Value
gene id CI01000001_13235608_13240350
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13235608 ~ 13240441 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_13235608_13240350.mRNA
AGCTGGAGTCCAGCCAAACCCAAACACTGCAGAGCTGCTCCAAGAGGATGTGCGTATGTAGTCCTGAGAGCTTTATCAGAGTGCACTAACAACACGCTCCTGGTGAATACCATGAAGCCCAAGTCTCTCTGTGTCCCGCGGCTTGGCCTCTTTGAGGACGTTACTGGCAGATACAGGCGGCAGAATGTAAGAAAAGCTCTTCGCTACAGCTGGAAATGTCTGATGTTGGGTCTGCAGAACTTCACTGTGGGATACTCCACCCCTCTCTCTGCTGCTGCCACAATTGTTCCAGATTTCCACCCGGGAGGAGCCTGGGGTTGAGAGAATCTGTGACCAGCATTTCTACTTTACTGTCAGGACCCAAAATCTTCTTATATGGAGCAGATAATACTGCACATCCAGATGCTGATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_13235608_13240350.mRNA True 412 mRNA 0.50 2 13235608 13240441

Neighbor

gene id symbol gene type direction distance location
CI01000001_13220895_13223877 ARMC1L coding upstream 11238 13220895 ~ 13224370 (+)
CI01000001_13160253_13167224 MYB coding upstream 67103 13160253 ~ 13168505 (+)
CI01000001_13011184_13014251 TBPL1 coding upstream 221346 13009419 ~ 13014262 (+)
CI01000001_13002416_13005974 NA coding upstream 229575 13002214 ~ 13006033 (+)
CI01000001_12991367_12993048 NA coding upstream 242165 12991276 ~ 12993443 (+)
CI01000001_13242387_13245977 NEMP1 coding downstream 1946 13242387 ~ 13246245 (+)
CI01000001_13266612_13285039 PAN2 coding downstream 26102 13266543 ~ 13285293 (+)
CI01000001_13290327_13291466 PLAGX coding downstream 49166 13289607 ~ 13293479 (+)
CI01000001_13297434_13300865 TRAPPC6B, GM13880 coding downstream 56993 13297434 ~ 13300865 (+)
CI01000001_13301404_13306593 TPX2 coding downstream 60963 13301404 ~ 13306593 (+)
G19979 NA non-coding upstream 26635 13208625 ~ 13208973 (+)
G19972 NA non-coding upstream 31836 13203550 ~ 13203772 (+)
G19970 NA non-coding upstream 33975 13201432 ~ 13201633 (+)
G19969 NA non-coding upstream 34303 13201102 ~ 13201305 (+)
G19968 NA non-coding upstream 34813 13200579 ~ 13200795 (+)
G19880 NA non-coding downstream 399 13240840 ~ 13241241 (+)
G19864 NA non-coding downstream 1029 13241470 ~ 13242127 (+)
G19990 NA non-coding downstream 55535 13295976 ~ 13296334 (+)
G19878 NA non-coding downstream 137199 13377640 ~ 13379606 (+)
G19993 NA non-coding downstream 141190 13381631 ~ 13381868 (+)
G19395 NA other upstream 1553791 11681322 ~ 11681817 (+)
G19314 NA other upstream 1676935 11501194 ~ 11558673 (+)
G19039 NA other upstream 2381625 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2695762 10538388 ~ 10539846 (+)
G18937 NA other upstream 2759219 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 272963 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021797 si:dkey-126g1.9 coding NC_007134.7 CM002907.2 31933583 ~ 31940912 (+)