CI01000001_13266612_13285039 (PAN2)


Basic Information

Item Value
gene id CI01000001_13266612_13285039
gene name PAN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13266543 ~ 13285293 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_13266612_13285039.mRNA
ATATATATTCATAAGGGTCACAAAGACGCCATTTTGCTGTCCCTCTAACCCAGCACCACCATCCTCATGATGAACTTCGAGGGTCTGGACCCGGGCTTGGGCGAATACGCGCCCGGCCTGCACGGCAGCCTGGAGCCCGGTCTGGACTCTTCCATGGACCCGCGGCTCGACCCGGCGCTGCTGCAGGGCGTGGAGCTCGACCCCGATGCGCTGGCCGTGCCGGTGTCCGACTCGGTGCACATAGTGGAGGGGATGTACTCAGAACTGCACAGTGTGGCTGCCGAAGTCGGGATCCCTGTGACAGCCACACATTTCGACCTGCAGGAGGAGCTGCTTTGGATGGGGAACCACCGGGGACATGCAAGTTCCTTCTTTGGTCCCACAATGGGCCGCTACTCCTCTTTCCAGGTGCACATGACTGATGACATTCGCCACATCCAGAGTATGGACACGGGGGTGCTGTTTCTGACCAAAAACAACCTTAAATGCCTCACGCGAGGAGGTTTCATTATGTTTGATTATCCAATGGAGGAGGGTGCAGATATGCACAGTTTGATTCTGAACGATAATAACACATTGTTAATGGGGGGTCTGCAGAACTATGTGGCAGAACTGGACCTCACCACAGTACAGGAAACACAAAAATTTACTGTTGAAGTGCCCGGAGTCGCCATCATGAGACAGTCCAATCGCTTCTTTTTTTGCGGTCACACCTCTGGCAAGGTGTCTCTGCGTGATCTACGTACATTTAAAATGGAGCACGAGTTTGATGCGTTCTCTGGAAGCCTGTCAGATTTCGACGTACACGGTAACCTGTTAGCGGCGTGTGGCTTCTCGAGCCGTGGCCTGAACGGACTGTCATGTGACCGGTTCCTCATGGTGTATGACCTACGCATGATGAGGGCCATCACCCCACTGCAGGTCCACGTGGACCCCCTTTTTCTCCGCTTCATCCCCACATACACCTCCCGTCTGGCTATCATTTCACAAACAGGTCAGTGTCAGTTCTGCGAGCCCACCGGCCTGGCCAATCTGGCTGATATCTTCCACGTCAACACTGTGGGGCAGCTGCTGATGAGCTTTGATGTGTCCTCCAGCAAACAGGCGCTCTCCTTTGGGGACTCTGGTGGCTGTGTGCACCTGTGGTCCAGCGCCCCAGAGGTGTCCTTTAACAGTTACTCCAGGGAGACGGAGTTAGCCCTGCCCTGCCTGGTGGACTCCTTGCCCCAGCTGGATTGGAACCATGAGCTGATGCCTCTGTCCCTTCTGCCCATGCCCCTCACCAGTACAGAGCCCCTGCTCTCTGATTGGCCCACCTCCCTTATCACACCCAGCCCCAGACGAGCCCCTGCAGTCGATCCAGAGATTCTTAGGACTATGAAAACTGTGGGCTTTATCGGATATGCTCCCAATCCTAGAACCCGTCCCCGAAATCAGGTTCCCTATAAGATTAAAGAAGTAGAACTTGAGTATGACAGCTATAATCAGGTCCCGGAGTCTCCTATTGGCCGAGATGAGGAGCCGCATCTTTACATGATTCCAAAGAAATACAGGAAGGTGACCATTAAATATTCCAAACTGGGACTGGAAGACTTTGATTTTAAGCACTATAACCGGACTCTGTTTGCTGGTTTGGAGCCTCACATACCCAATGCTTACTGTAACTGCATGATCCAGGTGCTGTACTTCCTGGAGCCAATCAGGTGCCTGGTACAGAATCACTTGTGTCAGAAGGAGTTCTGTCTGGCTTGTGAGCTGGGCTTCCTTTTTCACATGCTAGACTTGAGCAGAGGAGACCCCTGCCAGGCCAGTAATTTTCTCCGGGCTTTCCGGACAATCCCAGAGGCCTCTGCGTTGGGTTTGATCCTGGCTGACTCTGATGAACAGACAGGGAAAGCCCGTTTAGGGCGTCTCATCCAGAGCTGGAATCGTTTCATTCTTGCACAGCTGCATCAGGAAACACTGGAGCAGGAAGGACCTCAGGCATACAGAGGAGCGAGCAGCAGTGCGCTGGGTTCCTCGGGGGAGTCTGTGATTGGCCGGTTGTTTGGCTGTGAAGTGGAGAACAGCAGTTCGTGTCGCTGTGGAAAGGAGACAGTTCGCTCTTCTTTGACCCTGCTGTTTACCATGCATTACCCTGAGCAGAGCTCTCTGGATAAGAAGATAGAGGAATGTGACTTCGCAGACATCCTGAAGAAGAGTATCTGTCTGGAACAGAGCACACAGGCCTGGTGTGACAACTGTGAGAAATACCAGCCAACAGTGCAGACCAGGAATATTCGCTGTCTGCCTGATGTTCTGGTGATCAACTGTGAGGTGAACAGCGCTAAAGAGGCAGAGTTCTGGAAGGCACAGACTGAGTATACGTTCAACAAAGCTCTGAAGAAAGAGGCAGCTGAACCTCAAAAACCCAAAGAGCCTCTACCGACAGAATGGTGTTTAGAGGAAGAGCTGTGCAGCGTGGAGGGCTTGACATTTGACTCTCAAGCGGAGGACATGAGGCACGTGTGGATCCCTCTTAGTCTGAAGATGTGCATTAGTAAGTCTCAGGGCCTGGAGGTCAGCAGCCTGTCTGAGGGAGAGGAGCTGACTGAAAGTGAAGAAGCAGAAGGGGCTTCTATCTATGACCTGGTCGTCACTGTGTCTCACATACAAGATGCTCGGACCGGAGGAAACCTGGTGGCACATATCAAAGTGGGCGAGACCTACCATCAGAGGAAAGAAGGAGTAACACACCAGCAGTGGTATCTGTTCAATGATTTTCTGATTGAGCCGATTGACAAGGCTGAATCAGCACAGTTTGATGCGAACTGGAAGGTTCCTGCTGTACTTTACTACATCAAGAGGAACTACCACGCCAAGTATGATTTGCGAATTAAGAACCCTATTGAGGCCAGCGTTCTGCTGACGGAGGCCTCGTTGGCACGGAAACAGAGGAAGAGTCACGCCACCTTCATACCCCTAATGGTGAGCGAGATGCCGCAGGCTGGAGACCTTGTTGGATTAGACGCAGAGTTTGTCACGCTCAACCAGGAAGAAGCAGAACTGCGCAGTGACGGGACCAAGTCCACCATTAAGCCCAGCCAGATGTCTGTCGCTCGTATCACATGTGTGAGAGGCCAGGGTCCCAATGAGGGAGTGCCGTTCATTGATGACTACATATCTACACAGGAACAGGTGGTGGACTACCTGACCCAGTACTCGGGTATCAAACCTGGAGATCTGGACGCAAAGATTTCATCGAAACACTTGACTACTCTGAAATCTACGTATCTTAAATTGCGATTTCTTATCGACACTGGTGTTCGCTTCGTCGGCCATGGGTTGCAGAAGGATTTTCGGGTTATTAACTTAATGGTTCCAAAAGACCAGGTGATTGACACCGTCTACCTCTTCCACATGCCTAGGAAACGTATGATATCTCTGCGTTTCCTGGCATGGTACTTCCTCGATCTGAACATCCAGAGTGAAACTCATGATAGTATCGAAGACGCACGGACTGCCCTACAGTTGTACAGGAAGTACCTGGAGCTGAGTCATAACGGACGACAAGAAGAGTTCCGGAAGGTTCTCAAGGCTCTCTATGAGAAAGGACGCAAGCTAGACTGGAAAGTTCCAGATGTTGACTCTGCAGATGGTCAAGGTAGCCCAAAAAGTACAGCCGTGTTTCCCTCTGTGATGGGTTTATGATTCGATTCTCCTGTTGGTTATATTCCTGCCAAACAGACACCAGCTCACGTCATTTCTCGTACAGCCTTTCAGTGTTTTACTTAATGAATATTTCATGTCATTAGGTAGCAAATCTGAAATAAGGCATATTATTCTGTGTTAGAAAAAGTCTGTTTTGCCCTTTAAAAATTGGGGGAATCAAAGGAATTTTCATTATGTCAGGGTTTTCTCCACAGAATTATGTATCCTGTATGTGTCTGTCAGGAAGAATATGA

Function

symbol description
pan2 Predicted to enable metal ion binding activity; nucleic acid binding activity; and poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of PAN complex. Predicted to be active in P-body. Orthologous to human PAN2 (poly(A) specific ribonuclease subunit PAN2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_13266612_13285039.mRNA True 3944 mRNA 0.51 25 13266543 13285293

Neighbor

gene id symbol gene type direction distance location
CI01000001_13242387_13245977 NEMP1 coding upstream 20298 13242387 ~ 13246245 (+)
CI01000001_13235608_13240350 NA coding upstream 26102 13235608 ~ 13240441 (+)
CI01000001_13220895_13223877 ARMC1L coding upstream 42173 13220895 ~ 13224370 (+)
CI01000001_13160253_13167224 MYB coding upstream 98038 13160253 ~ 13168505 (+)
CI01000001_13011184_13014251 TBPL1 coding upstream 252281 13009419 ~ 13014262 (+)
CI01000001_13290327_13291466 PLAGX coding downstream 4314 13289607 ~ 13293479 (+)
CI01000001_13297434_13300865 TRAPPC6B, GM13880 coding downstream 12141 13297434 ~ 13300865 (+)
CI01000001_13301404_13306593 TPX2 coding downstream 16111 13301404 ~ 13306593 (+)
CI01000001_13309045_13319725 NA coding downstream 23752 13309045 ~ 13319879 (+)
CI01000001_13329841_13334948 NA coding downstream 44548 13329841 ~ 13335302 (+)
G19864 NA non-coding upstream 24416 13241470 ~ 13242127 (+)
G19880 NA non-coding upstream 25302 13240840 ~ 13241241 (+)
G19979 NA non-coding upstream 57570 13208625 ~ 13208973 (+)
G19972 NA non-coding upstream 62771 13203550 ~ 13203772 (+)
G19970 NA non-coding upstream 64910 13201432 ~ 13201633 (+)
G19990 NA non-coding downstream 10683 13295976 ~ 13296334 (+)
G19878 NA non-coding downstream 92347 13377640 ~ 13379606 (+)
G19993 NA non-coding downstream 96338 13381631 ~ 13381868 (+)
G19996 NA non-coding downstream 97825 13383118 ~ 13383516 (+)
G20007 NA non-coding downstream 113499 13398792 ~ 13399137 (+)
G19395 NA other upstream 1584726 11681322 ~ 11681817 (+)
G19314 NA other upstream 1707870 11501194 ~ 11558673 (+)
G19039 NA other upstream 2412560 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2726697 10538388 ~ 10539846 (+)
G18937 NA other upstream 2790154 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 228111 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008680 pan2,LOC107671829 coding CM030126.1 CM030126.1 8730725 ~ 8756432 (-)