CI01000001_13329841_13334948


Basic Information

Item Value
gene id CI01000001_13329841_13334948
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13329841 ~ 13335302 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_13329841_13334948.mRNA
CTGTGTGGCCTGGCCTTAATAGTTCTGGGGATATTGGTTCAAGTTGCTATTCACAACACGGCCATCATCAAAGGATACACTGGCATTCCTCTAGTGCTGATAATAGTAGGAGTCATCATCTTCTTCATCGCATTCTTTGGCTGCTGTGGCGCCTGGAAGGAGAATCAGTGCATGGTCACCATGTTTGCTGTTCTTCTCTCTCTCATCGTCATCACTGAAATTGGAGCCGCCATCGCTGGATATGTCTTCCGTGGGAAAGTGAATGATCATCTGAAGGAACGCTTTGAGGTCATGATCGCAGAATACAACAAAACAGAAAACCATGAAGCCCTCGATTCTCTCCAGAAGGAGCTCAAGTGCTGTGGAAGAAACTCCTCTAGTGATTGGGTGAACTTCAGCCCCGGTCACAAGTCCGTCCCAGACTCCTGCTGTAAAAATATCACTAAGGACTGTGGTATTGGAGCTTTGGGAGATGACAAAATAATCTACACGGAAGGATGTCAACACGCTTTTGAGAAATATATAAACCAGCATATTTTGTGGCTTGCTGTGGGAGCTCTGGTCATCGCGTTTGTGCAGATCACGGGCATTGTGTTGGCCTGCATCCTTATGCGAGCCATCCGCAGCGGCTATGAGGTCATGTGATCACATCCAGTCACAGCACATCGCTTAAAGCTCTTAGAGACTGTTCAGGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCATTATATAAATGCTAATTATTTCCCCCCTTGCTGTGTAAGTTGGCAATACTCATTTTCTCTGAGAATGAAATAACTATATCTGTTTCTATGACAAATCCAGTAGATTAGTCTACTGTTAAGTCTCTGATTTATGCTTACGTATTCTGTCTTTAGACATTGTTTTAAATTTGTCCTTTACTGCTTTGTTGACATTTCTTTGGGTTACAGAACAACAATCAATGAATTACAGATATGACAAATTTTATACTTTTAAAGAACATTCATGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_13329841_13334948.mRNA True 999 mRNA 0.41 6 13329841 13335302

Neighbor

gene id symbol gene type direction distance location
CI01000001_13309045_13319725 NA coding upstream 9962 13309045 ~ 13319879 (+)
CI01000001_13301404_13306593 TPX2 coding upstream 23248 13301404 ~ 13306593 (+)
CI01000001_13297434_13300865 TRAPPC6B, GM13880 coding upstream 28976 13297434 ~ 13300865 (+)
CI01000001_13290327_13291466 PLAGX coding upstream 36362 13289607 ~ 13293479 (+)
CI01000001_13266612_13285039 PAN2 coding upstream 44548 13266543 ~ 13285293 (+)
CI01000001_13342394_13343095 NA coding downstream 6791 13342093 ~ 13343784 (+)
CI01000001_13470823_13478394 NA coding downstream 135368 13470670 ~ 13478398 (+)
CI01000001_13514115_13517063 NA coding downstream 178813 13514115 ~ 13517063 (+)
CI01000001_13524372_13525844 NA coding downstream 188159 13523461 ~ 13525863 (+)
G19990 NA non-coding upstream 33507 13295976 ~ 13296334 (+)
G19864 NA non-coding upstream 87714 13241470 ~ 13242127 (+)
G19880 NA non-coding upstream 88600 13240840 ~ 13241241 (+)
G19979 NA non-coding upstream 120868 13208625 ~ 13208973 (+)
G19972 NA non-coding upstream 126069 13203550 ~ 13203772 (+)
G19878 NA non-coding downstream 42338 13377640 ~ 13379606 (+)
G19993 NA non-coding downstream 46329 13381631 ~ 13381868 (+)
G19996 NA non-coding downstream 47816 13383118 ~ 13383516 (+)
G20007 NA non-coding downstream 63490 13398792 ~ 13399137 (+)
G19883 NA non-coding downstream 131241 13466543 ~ 13470559 (+)
G19395 NA other upstream 1648024 11681322 ~ 11681817 (+)
G19314 NA other upstream 1771168 11501194 ~ 11558673 (+)
G19039 NA other upstream 2475858 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2789995 10538388 ~ 10539846 (+)
G18937 NA other upstream 2853452 10474984 ~ 10476389 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021803 cd63 coding NC_007134.7 CM002907.2 32066168 ~ 32085939 (+)