XLOC_021803 (cd63)


Basic Information

Item Value
gene id XLOC_021803
gene name cd63
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32066168 ~ 32085939 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043245
gttttttgtgtgtgtacgaGTAGGCTCAGCATAATCCGCAGTAAGGGGTGGGGTGCTATTAGGACGGGTTACATTTACTAAGTACACACTCATCGACTAGTCACATCCGTGTACTGTTGCTGGGATCGACAGCATCCAAGTTTTCGCTCTACAAGTTTCGCTTTGCTGAACATTTTACTCGAGGATTTAACCGAGAACCACCATGGCTGTAGAAGGAGGAGCGAAATGTGTCAAATACCTgctctttttctttaatttcatcttctggCTGTGTGGCCTGGCCCTCATAGTTCTGGGGATACTGGTTCACGTTTCTTTGCACAACACGGCGATCCTCCAAGGAGCCTCTGGTTCTCCTATGGTGCTGATAGTGGTGGGCGTCATCATCTTCTTCATCTCTTTCTTCGGCTGCTGTGGTGCCTGGAAGGAAAATCAGTGCATGGTCGTTACGTTTGCAATCATTCTCTCCCTCATCGTCATTACTGAAATTGGAGCCGGCATTGCTGGATATATCTTCCGTGGAAAAGTGAATGAACTGCTTGATCAGAGCTTTAACACCATGATTGCAGGATACAACAAGACAGAGGAATACCGCACAACCCTCGATTCTATACAGAAGCAGCTCAAGTGCTGTGGAGGAAACTCCTCTAGTGATTGGGTGAACTTCAGTGCTGATCACATTTCGGTCCCAGATTCCTGCTGTAAAAACGTCACTAAGAACTGTGGTATTGGAGCTATGACGAAACCCACCGTAATCTACTTAGAGGGTTGTCAACCTATTTTGGAGACACGCATAAAGGAAAATATTTTGTGGATTGCTGTGGGAGCTCTGGTCATTGGATTTGTGCAGATTACAGGCATTGTGTTGGCCTGCATTTTGTCACGAGCCATCCGCAGCGGCTATGAGGTCATGTGATCACATCCAATCACTGCGCTTCGTTCAGATCGCATCAGTTAAAGCTCCTAGAGACTGTTCAGGTGTTTTTAAACCTATTATATAAATGCCAGTTATTTCCCCCCTTGCTGTATAAGTTGACTATACTTATTTTCACTCAGAATTAAATACTACCACATCTTAACTTTCTGCGACTAATCCGGTAGATTAGTCTACTGTTAAGTCACTGATTTACTCGGCTTTGGTATTGTTGCTTTTGGCATTGTTTTAAACTGGATATTTACCACCATGTTGACATTCCTTTGGGTTACAGGACTACAAATCAAATACTGATATGCCAAATTTTATACGTGTATAGAGCATTAATgtttaaaaggaaaaataaaatgttctaaTCTA

Function

symbol description
cd63 Acts upstream of or within hatching. Predicted to be located in several cellular components, including cell surface; cytoplasmic vesicle; and lysosomal membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including anterior axial hypoblast; dorsal fin; hatching gland; intermediate mesenchyme; and pronephric duct. Orthologous to human CD63 (CD63 molecule).

GO:

id name namespace
GO:1900746 regulation of vascular endothelial growth factor signaling pathway biological_process
GO:0035188 hatching biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04142 Lysosome
ko05205 Proteoglycans in cancer
ko04147 Exosome
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-030131-180 Acts upstream of or within hatching. Predicted to be located in several cellular components, including cell surface; cytoplasmic vesicle; and lysosomal membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including anterior axial hypoblast; dorsal fin; hatching gland; intermediate mesenchyme; and pronephric duct. Orthologous to human CD63 (CD63 molecule).

Ensembl:

ensembl_id ENSDARG00000025147

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043245 True 1294 mRNA 0.43 8 32066168 32085939

Neighbor

gene id symbol gene type direction distance location
XLOC_021802 tpx2 coding upstream 5283 32028574 ~ 32060885 (+)
XLOC_021801 trappc6b coding upstream 38970 32021803 ~ 32027198 (+)
XLOC_021800 plagx coding upstream 45970 32011768 ~ 32020198 (+)
XLOC_021799 pan2 coding upstream 58350 31979602 ~ 32007818 (+)
XLOC_021798 nemp1 coding upstream 112525 31942040 ~ 31953643 (+)
XLOC_021804 zgc:56699 coding downstream 15263 32101202 ~ 32107608 (+)
XLOC_021805 CU041363.1 coding downstream 108469 32194408 ~ 32201494 (+)
XLOC_021806 NA coding downstream 124319 32210258 ~ 32213360 (+)
XLOC_021807 NA coding downstream 164417 32250356 ~ 32253077 (+)
XLOC_021808 slc39a5 coding downstream 249932 32335871 ~ 32352179 (+)
XLOC_021795 NA non-coding upstream 180255 31863739 ~ 31885913 (+)
XLOC_021793 BX927365.3 non-coding upstream 398625 31667429 ~ 31667543 (+)
XLOC_021791 CR759830.2 non-coding upstream 632505 31433579 ~ 31433663 (+)
XLOC_021790 CR759830.1 non-coding upstream 632820 31433273 ~ 31433348 (+)
XLOC_021785 NA non-coding upstream 980217 31078564 ~ 31085951 (+)
XLOC_021812 NA non-coding downstream 394391 32480330 ~ 32487726 (+)
XLOC_021814 NA non-coding downstream 476671 32562610 ~ 32562814 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_13329841_13334948 NA coding CI01000001 null 13329841 ~ 13335302 (+)