XLOC_021798 (nemp1)


Basic Information

Item Value
gene id XLOC_021798
gene name nemp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31942040 ~ 31953643 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043230
AGACGCGGCGGTTCCTCCTGTACTGCAGGCGACACTGTTCCACACGCAAGTCTCGTCGGTAACACGTTACTCGACCGTCGAAGAAACGCGAGAAGACATCATGGCGGGATTCATGAAATACAAAAGTGTCTCAACAACAATCGAAACTGTCAGATTGAAACTTATCTTAACtgctgtgttgtttttatttcctttttctcAAACGTCAGGTGCCAGCCGTCCCATCATTGAAATTAAAGATGGACAAGAAATCAAAGTACAAGCTGCGCAACATTTCTGCTACAACAACACCATCATACCCGGATGGAGGGAAACATGGACTAGAATACAGGTGAGAGTGTGGAGCACTACAAAGCTGAAAGTGACGGTGGTCAATGATGAGCAAGACCTAAAGGAGCTCGAGCACTTCAGCATCTGGAAACTCGTGCAGTATTTTGTTCGCGAACAGACCAATGAGACCACCATAAGTGTCAGTCTGTTTAACAacaagacctgcttcagagtggaCCCTTCAGAAAGCCGTACTCTCTATACGGTACAACCCAGCCGACATTTTGACATCTACCTGTTTTTGGTTTTTCTGGCTGGAGTGTTGCTGTTCTTTTATGCAGATGTTCTAAGCAGAAGTCAAGTGTTCCACTACTCCGCTGGCATGAGCACTGGTATGATTGCCTCCCTCCTCATCCTCATCTTTATCGTTTACAGATTTTTACCCAAGAAAAGCCCATTCTATATGCTGGTGGTGGGCGGCTGGTCGTTTTCGCTCTACATCATCCAGCTGGTGTTTAGGAATCTTCAAGTGATACTTACAGATCACTGGCATCTGGCTATCGGTTATGTCTTTGTGGTCGGGTTCATCAGTTTTGCAGTGTGTTATCGATATGGCCCTCTGGTGGAGGAACGAAGTATCAACATTTTGTCCTGGGCGCTGCAGATTTTCGGCCTTCTGCTAGTCTATGCTGGAATTCAGGTCCAACAAGTGGCTTTTGCCATCATGATAGCTGCTTTCTGCTCTAAAAACCTGGAGTACCCTTTTAACACAGCATTCATGCTTTATCACAAGTTGAAGCCAAAGAAACTGGAGCCACGGCGTCTGCTGACAGAAGAAGAGTTTCAGAGACAGTCAGAGGTGGAGACGCAGAAAGCTCTGGAGGAACTTAGAAAATACTGTGGCAGTCCTGATTTCAACACCTGGAAGACAGTCTCAAGGCTCCAGTCTCCTAAGAGGTTTGCAGATTTCATCGAGGGCTCTCCACATCTGCTGTCCAACGAAGTGTCAGTTCACATGCAGGAGTACGGACTGGGTGGATCCTTCTTTGAGGACGAGCTCTTCTCCACTGATGAGGAAGataaggaggaggaggaggacggcTGGGAAACAGAAGATGATATCAAGCCAGAGGTGACCTCTCCACGAATGAACAACACACGGGGGAAATAACTGGAGAACAGtgttggaaaatatttaattaagCAGATCTGAGATCTGATCAAGCGTAGCATTTACTGTTTATTGATCCATCTGCAATGGATGGTTTAAATTGAAAATACCCTGGACGTTTAGTTTttcatgatttattattattattttatttctcttaaatgtttttttatttgacttgCTGTGTGTGGAGGGAACTGTGAAAGCTGCGTCGTTACATGGACTGTATTTtaggttatgttttgtttttatgttcgtATTAAGGCCCAGGCACACGTTTACCAGtaagaacagaaaactgttgAACAGAAGAGGCACATACGTTACACAGCTGTTTGTGATTATTTACTGGAGCCGTAAGTTTGGTCAAAGGATTATTTTCTTATGAATAATAAAAGCGG

Function

symbol description
nemp1 Predicted to be located in nuclear inner membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear envelope. Orthologous to human NEMP1 (nuclear envelope integral membrane protein 1).

GO:

id name namespace
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-182 Predicted to be located in nuclear inner membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear envelope. Orthologous to human NEMP1 (nuclear envelope integral membrane protein 1).

Ensembl:

ensembl_id ENSDARG00000073899

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043230 True 1842 mRNA 0.44 9 31942040 31953643

Neighbor

gene id symbol gene type direction distance location
XLOC_021797 si:dkey-126g1.9 coding upstream 1128 31933583 ~ 31940912 (+)
XLOC_021796 armc1l coding upstream 22885 31912882 ~ 31919155 (+)
XLOC_021795 NA coding upstream 56127 31863739 ~ 31885913 (+)
XLOC_021794 myb coding upstream 111997 31815423 ~ 31830043 (+)
XLOC_021793 BX927365.3 coding upstream 274497 31667429 ~ 31667543 (+)
XLOC_021799 pan2 coding downstream 25959 31979602 ~ 32007818 (+)
XLOC_021800 plagx coding downstream 58125 32011768 ~ 32020198 (+)
XLOC_021801 trappc6b coding downstream 68160 32021803 ~ 32027198 (+)
XLOC_021802 tpx2 coding downstream 74931 32028574 ~ 32060885 (+)
XLOC_021803 cd63 coding downstream 112525 32066168 ~ 32085939 (+)
XLOC_021791 CR759830.2 non-coding upstream 508377 31433579 ~ 31433663 (+)
XLOC_021790 CR759830.1 non-coding upstream 508692 31433273 ~ 31433348 (+)
XLOC_021785 NA non-coding upstream 856089 31078564 ~ 31085951 (+)
XLOC_021805 CU041363.1 non-coding downstream 240765 32194408 ~ 32201494 (+)
XLOC_021806 NA non-coding downstream 256615 32210258 ~ 32213360 (+)
XLOC_021807 NA non-coding downstream 296713 32250356 ~ 32253077 (+)
XLOC_021812 NA non-coding downstream 526687 32480330 ~ 32487726 (+)
XLOC_021814 NA non-coding downstream 608967 32562610 ~ 32562814 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_13242387_13245977 NEMP1 coding CI01000001 null 13242387 ~ 13246245 (+)