XLOC_021799 (pan2)


Basic Information

Item Value
gene id XLOC_021799
gene name pan2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31979602 ~ 32007818 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043231
CGGAAGTGCgcggttgtttttgttttgaatgaaGCGAGTAGCATGAGCATATGGATACGAGGATAACTATAGTCTAAAGCACCGTCCTCATGATGAACTTCGAGGGTCTGGACCCGGGTTTGGGCGATTATGCGCCTGGCCTGCATGGTGGCCTGGAGCCCGGTCTGGACTCTTCCCTGGACCCGCGGCTCGACCCGGCGCTACTGCAGGGTGTGGAGATCGACCCCGATGGGCTGGCTGTGTCAGAGTCTGTGCACATAGTGGAAGGCATGTACTCGGAGTTGCACAGCGTGGCAGCTGAAGTCGGGATCCCTGTGACAGCCACACACTTCGATCTGCAGGAGGAGTTGCTCTGGATGGGGAACCACCGGGGACACGCGAGTTCCTTCTTTGGGCCGACAATGGGCCGCTACTCGTCTTTCCAGGTGCACATGACTGACGACATTCGCCATATCCAGAGTATGGACACGGGGGTGCTGTTCCTGACCAAAAACAACCTCAGATGCCTCACACGAGGAGGTTTTATCATGTTTGATTATCCAATGGAGGAGGGTGCTGACATGCACAGCTTGATTCTTACTGAAAATAACACCTTGTTAATGGGAGGCCTGCAGAACTATGTGGCTGAACTGGACCTCACCACAGTGCAGGAAACTCAAAAATTTACTGTTGAAGTGCCTGGTGTCGCCATCATGAGACAAACTAGTCGTTTCTTCTTTTGTGGTCACACATCTGGCAAGGTGTCTCTTCGTGATCTGCGCACGTTTAAAATGGAGCACGAGTTTGATGCATTCTCCGGCAGCCTGTCTGATTTCGACATTCACGGTAACCTGTTAGCGGCATGTGGTTTCTCAAGTCGCGGTCTGAACGGGCTGTCCTGTGATCGGTTCCTCATGGTGTACGATCTGCGCATGATGAGGGCCGTCACCCCATTGCAGGTCCACGTGGACCCCCTATTCCTCCGCTTTATCCCCACATACACCTCCCGCCTGGCCATCATTTCACAAACAGGTCAGTGTCAGTTCTGTGAGCCCACCGGCCTGGCCAGCCTGGCTGATATCTTCCACGTCAACACAGTGGGCCAGCTGCTGATGAGCTTTGACGTGTCCTCCAGCAAGCAGGCTCTGTCATTCGGGGACTCGGGCGGCTGTGTGCATCTGTGGTCCAGCGCCCCTGAGGTGTCCTATAACAGCTACTCTAGAGACACAGAGCTGGCGCTGCCCTGCCTGGTGGACTCACTGCCGCAGATGGACTGGAACCACGAGCTGATGCCTCTGTCTCTTCTGCCAATGCCTCTCACCAGCACTGAGCCTCTGCTGTCTGACTGGCCCACCGCCCTCATCGCACCCAGCCCCAGACGAGCGCCTCCAGTAGACCCAGAGATTCTGAGGACAATGAAAACTGTGGGATTTATTGGATACGCACCAAATCCTAGAACCCGTCCCAGAAACcagGTTCCATATAAGATAAAAGATGTCGAGCTTGACTATGACAGCTATAATCAGGTGCCGGAGTCTCCCATTGGTCGAGACGAGGAGCCACATCTTTACATGGTGCCAAAGAAATACAGGAAGGTGACCATTAAATATTCCAAACTGGGACTGGAAGACTTTGATTTTAAGCACTATAATCGGACTCTGTTTGCTGGTCTGGAGCCTCACATACCCAACGCTTACTGTAACTGTATGATCCAGGTTTTGTACTTCCTGGAGCCCATCAGGTGTCTGGTACAGAATCACCTGTGTCAGAAAGAGTTCTGCCTGGCCTGTGAGCTGGGCTTCCTCTTCCACATGCTGGACCTGAGCAGAGGAGACCCCTGTCAGGCCAGTAATTTTCTCCGGGCTTTCCGGACAATTCCCGAGGCATCTGCTCTGGGTTTAATCCTGGCTGACTCCGATGAGCAGACTGGGAAAGCCCGTCTGGGCCGTCTAATCCAGAGCTGGAACCGTTTTATTCTTGCACAGCTGCATCAGGAAACGCTCGAGCAGGAAGGGCCGCAGGCGTACAGAGGAGCCAGCAGCAGCAGTGTGCTGAGCTCCTCAGGGGAGTCTGTGATTAGCCGGTTGTTTGGCTGTGAAGTGGAGAACAGCAGTCTGTGTTGTTGTGGAAAGGAGACGGTTCGCTCTTCATTGACGCTGCTGTTTACCATGCATTACCCCGAGCAGAGCTCCCTGGAGAAGAAGATAGAGGAATATGAATTTGTAGATATTCTGAGGAAGAGTATCTGTCTGGAACAGAGCACACAGGCCTGGTGTGACAACTGTGAGAAGTACCAGCCAACAGTGCAGACCAGGAACATTCGCTGTCTGCCTGATGTTCTGGTGATAAACTGTGAGGTGAACAGTGCAAAAGAGGCAGAATTCTGGAAGGCACAGACTGAGtatgtgttcaACAAAGCTTTGAAGAAAGAAGCAGCCGAACCTCCCAAACCTAAAGAGCCTTTACCCACAGAATGGTGTTTGGAagaaGAGCTGTGCAATGTGGAGGGCTTGACCTTTGACACTCAAGCAGAAGACATGAGGCATGTGTGGATTCCTCTCAGTCTGAGGATGTGCATCAGTAAAGCTCAAGGCCTGGAGGTCAGCAGCCTAACTGAGGGAGAGGAGCTGACTGAAAGTGAAGAGGCAGAAGGAGTGTCCATCTACGATCTGTTTGTCACTGTGTCGCATGTCCAGGACACTCGGACTGGAGGAAACATGGTGGCGCACATCAAAGTGGGCGAGACTTATCATCAGCGCAAAGAGGGAGTCACACACCAGCAGTGGTATCTGTTCAATGATTTTCTGATTGAGCCCATTGATAAGGCTGAATCGGTTCAGTTTGATGTGAACTGGAAGGTTCCTGCTGTACTTTATTACATCAAGAGGAACTACCACACCAAGTTTGATTTGCGCATTAAGAACCCTATCGAGGCAAGCGTTCTGCTGACGGAGGCTTCTTTAGCACGAAAACAGAGGAAGAGTCACGCCACCTTCATACCCCTCATGGTGAGCGAAATGCCACAGGTTGGAGACCTTGTCGGATTGGATGCAGAATTTGTCACTCTCAACCAGGAAGAGGCAGAACTGCGCAGCGATGGAACTAAGTCCACTATTAAACCCAGCCAGATGTCTGTTGCTCGTATCACTTGTGTGAGAGGCCAGGGACAAAATGAAGGAGTGCCGTTCATTGATGACTACATATCTACACAGGAACAGGTGGTAGACTATCTGACCCAGTATTCTGGTATCAAACCTGGAGATTTGGATGCAAAGATTTCCTCGAAACACCTGACTACTCTGAAATCCACATATCTTAAATTGCGGTTTCTTATTGACACTGGGGTTCGCTTTGTCGGGCACGGCTTACAGAAGGATTTCCGGGTCATAAACCTGATGGTCCCAAAAGACCAGGTGATCGACACTGTCTACCTCTTTCACATGCCTAGGAAACGAATGATCTCTCTGCGGTTCCTTGCATGGTATTTTCTTGATTTGAACATCCAGGGTGAAACTCATGACAGTATTGAAGATGCGCGGACTGCTTTGCAGTTGTACAGGAAGTACCTAGAGCTGAGCCATAATGGAGGACAGGAGGAGTTCCGGAAGGTTCTCAAGGCTCTCTATGAGAAAGGACGCAAGCTAGACTGGAAAGTTCCAGACATCGATTCTGCAGATGGTCAAGGCACAGCCGTATTTCCCTCAGTGATGGGTTTATGATTGGATCTGTTGGATATATTCCTGCCAAACAGATGCCAGCTCTCCAGCACTTCTTGTATAGACTTTCGGTGTTCTCTTCCAACACTGTTTCATCCAAATTGCCACCTGATACATATATTTCATGTTGCACATCTGAAATAAGGCATGTTTTCTGTCCTAGAAAAAAGTCTGCCATTTGAAAACTGAACAATGAACAATTCACCATGCCAGTTCCTAGTCTATATCTGGTCTGTCAGGAAGAAAGTACACAAACAAATCATGATTTCAACACCTGTAAGAGCTCGTTCAAGTGTTTCATGCTTGCTTGTTAATGTTGTGTTGGAAATTGctctcattctgaaaatgaataTGGATCACGCAGTCTGTGGATTTACTGGCTTGTTTTCTATTTTGTAAAATATGTTGTACTTTTTCATAATGTGGCAGCTGAATAAAAAACCTTTGGATA
>TCONS_00043232
ATGATGAACTTCGAGGGTCTGGACCCGGGTTTGGGCGATTATGCGCCTGGCCTGCATGGTGGCCTGGAGCCCGGTCTGGACTCTTCCCTGGACCCGCGGCTCGACCCGGCGCTACTGCAGGGTGTGGAGATCGACCCCGATGGGCTGGCTGTGTCAGAGTCTGTGCACATAGTGGAAGGCATGTACTCGGAGTTGCACAGCGTGGCAGCTGAAGTCGGGATCCCTGTGACAGCCACACACTTCGATCTGCAGGAGGAGTTGCTCTGGATGGGGAACCACCGGGGACACGCGAGTTCCTTCTTTGGGCCGACAATGGGCCGCTACTCGTCTTTCCAGGTGCACATGACTGACGACATTCGCCATATCCAGAGTATGGACACGGGGGTGCTGTTCCTGACCAAAAACAACCTCAGATGCCTCACACGAGGAGGTTTTATCATGTTTGATTATCCAATGGAGGAGGGTGCTGACATGCACAGCTTGATTCTTACTGAAAATAACACCTTGTTAATGGGAGGCCTGCAGAACTATGTGGCTGAACTGGACCTCACCACAGTGCAGGAAACTCAAAAATTTACTGTTGAAGTGCCTGGTGTCGCCATCATGAGACAAACTAGTCGTTTCTTCTTTTGTGGTCACACATCTGGCAAGGTGTCTCTTCGTGATCTGCGCACGTTTAAAATGGAGCACGAGTTTGATGCATTCTCCGGCAGCCTGTCTGATTTCGACATTCACGGTAACCTGTTAGCGGCATGTGGTTTCTCAAGTCGCGGTCTGAACGGGCTGTCCTGTGATCGGTTCCTCATGGTGTACGATCTGCGCATGATGAGGGCCGTCACCCCATTGCAGGTCCACGTGGACCCCCTATTCCTCCGCTTTATCCCCACATACACCTCCCGCCTGGCCATCATTTCACAAACAGGTCAGTGTCAGTTCTGTGAGCCCACCGGCCTGGCCAGCCTGGCTGATATCTTCCACGTCAACACAGTGGGCCAGCTGCTGATGAGCTTTGACGTGTCCTCCAGCAAGCAGGCTCTGTCATTCGGGGACTCGGGCGGCTGTGTGCATCTGTGGTCCAGCGCCCCTGAGGTGTCCTATAACAGCTACTCTAGAGACACAGAGCTGGCGCTGCCCTGCCTGGTGGACTCACTGCCGCAGATGGACTGGAACCACGAGCTGATGCCTCTGTCTCTTCTGCCAATGCCTCTCACCAGCACTGAGCCTCTGCTGTCTGACTGGCCCACCGCCCTCATCGCACCCAGCCCCAGACGAGCGCCTCCAGTAGACCCAGAGATTCTGAGGACAATGAAAACTGTGGGATTTATTGGATACGCACCAAATCCTAGAACCCGTCCCAGAAACcagGTTCCATATAAGATAAAAGATGTCGAGCTTGACTATGACAGCTATAATCAGGTGCCGGAGTCTCCCATTGGTCGAGACGAGGAGCCACATCTTTACATGGTGCCAAAGAAATACAGGAAGGTGACCATTAAATATTCCAAACTGGGACTGGAAGACTTTGATTTTAAGCACTATAATCGGACTCTGTTTGCTGGTCTGGAGCCTCACATACCCAACGCTTACTGTAACTGTATGATCCAGGTTTTGTACTTCCTGGAGCCCATCAGGTGTCTGGTACAGAATCACCTGTGTCAGAAAGAGTTCTGCCTGGCCTGTGAGCTGGGCTTCCTCTTCCACATGCTGGACCTGAGCAGAGGAGACCCCTGTCAGGCCAGTAATTTTCTCCGGGCTTTCCGGACAATTCCCGAGGCATCTGCTCTGGGTTTAATCCTGGCTGACTCCGATGAGCAGACTGGGAAAGCCCGTCTGGGCCGTCTAATCCAGAGCTGGAACCGTTTTATTCTTGCACAGCTGCATCAGGAAACGCTCGAGCAGGAAGGGCCGCAGGCGTACAGAGGAGCCAGCAGCAGCAGTGTGCTGAGCTCCTCAGGGGAGTCTGTGATTAGCCGGTTGTTTGGCTGTGAAGTGGAGAACAGCAGTCTGTGTTGTTGTGGAAAGGAGACGGTTCGCTCTTCATTGACGCTGCTGTTTACCATGCATTACCCCGAGCAGAGCTCCCTGGAGAAGAAGATAGAGGAATATGAATTTGTAGATATTCTGAGGAAGAGTATCTGTCTGGAACAGAGCACACAGGCCTGGTGTGACAACTGTGAGAAGTACCAGCCAACAGTGCAGACCAGGAACATTCGCTGTCTGCCTGATGTTCTGGTGATAAACTGTGAGGTGAACAGTGCAAAAGAGGCAGAATTCTGGAAGGCACAGACTGAGtatgtgttcaACAAAGCTTTGAAGAAAGAAGCAGCCGAACCTCCCAAACCTAAAGAGCCTTTACCCACAGAATGGTGTTTGGAagaaGAGCTGTGCAATGTGGAGGGCTTGACCTTTGACACTCAAGCAGAAGACATGAGGCATGTGTGGATTCCTCTCAGTCTGAGGATGTGCATCAGTAAAGCTCAAGGCCTGGAGGTCAGCAGCCTAACTGAGGGAGAGGAGCTGACTGAAAGTGAAGAGGCAGAAGGAGTGTCCATCTACGATCTGTTTGTCACTGTGTCGCATGTCCAGGACACTCGGACTGGAGGAAACATGGTGGCGCACATCAAAGTGGGCGAGACTTATCATCAGCGCAAAGAGGGAGTCACACACCAGCAGTGGTATCTGTTCAATGATTTTCTGATTGAGCCCATTGATAAGGCTGAATCGGTTCAGTTTGATGTGAACTGGAAGGTTCCTGCTGTACTTTATTACATCAAGAGGAACTACCACACCAAGTTTGATTTGCGCATTAAGAACCCTATCGAGGCAAGCGTTCTGCTGACGGAGGCTTCTTTAGCACGAAAACAGAGGAAGAGTCACGCCACCTTCATACCCCTCATGGTGAGCGAAATGCCACAGGTTGGAGACCTTGTCGGATTGGATGCAGAATTTGTCACTCTCAACCAGGAAGAGGCAGAACTGCGCAGCGATGGAACTAAGTCCACTATTAAACCCAGCCAGATGTCTGTTGCTCGTATCACTTGTGTGAGAGGCCAGGGACAAAATGAAGGAGTGCCGTTCATTGATGACTACATATCTACACAGGAACAGGTGGTAGACTATCTGACCCAGTATTCTGGTATCAAACCTGGAGATTTGGATGCAAAGATTTCCTCGAAACACCTGACTACTCTGAAATCCACATATCTTAAATTGCGGTTTCTTATTGACACTGGGGTTCGCTTTGTCGGGCACGGCTTACAGAAGGATTTCCGGGTCATAAACCTGATGGTCCCAAAAGACCAGGTGATCGACACTGTCTACCTCTTTCACATGCCTAGGAAACGAATGATCTCTCTGCGGTTCCTTGCATGGTATTTTCTTGATTTGAACATCCAGGGTGAAACTCATGACAGTATTGAAGATGCGCGGACTGCTTTGCAGTTGTACAGGAAGTACCTAGAGCTGAGCCATAATGGAGGACAGGAGGAGTTCCGGAAGGTTCTCAAGGCTCTCTATGAGAAAGGACGCAAGCTAGACTGGAAAGTTCCAGACATCGATTCTGCAGATGGTCAAGGCACAGCCGTATTTCCCTCAGTGATGGGTTTATGA

Function

symbol description
pan2 Predicted to enable metal ion binding activity; nucleic acid binding activity; and poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of PAN complex. Predicted to be active in P-body. Orthologous to human PAN2 (poly(A) specific ribonuclease subunit PAN2).

GO:

id name namespace
GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly biological_process
GO:0006397 mRNA processing biological_process
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening biological_process
GO:0031251 PAN complex cellular_component
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004518 nuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004527 exonuclease activity molecular_function
GO:0004535 poly(A)-specific ribonuclease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-3113 Predicted to enable metal ion binding activity; nucleic acid binding activity; and poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of PAN complex. Predicted to be active in P-body. Orthologous to human PAN2 (poly(A) specific ribonuclease subunit PAN2).

Ensembl:

ensembl_id ENSDARG00000074675

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043231 False 4146 mRNA 0.50 26 31979602 32007818
TCONS_00043232 True 3609 mRNA 0.51 25 31981796 32007370

Neighbor

gene id symbol gene type direction distance location
XLOC_021798 nemp1 coding upstream 25959 31942040 ~ 31953643 (+)
XLOC_021797 si:dkey-126g1.9 coding upstream 38690 31933583 ~ 31940912 (+)
XLOC_021796 armc1l coding upstream 60447 31912882 ~ 31919155 (+)
XLOC_021795 NA coding upstream 93689 31863739 ~ 31885913 (+)
XLOC_021794 myb coding upstream 149559 31815423 ~ 31830043 (+)
XLOC_021800 plagx coding downstream 3950 32011768 ~ 32020198 (+)
XLOC_021801 trappc6b coding downstream 13985 32021803 ~ 32027198 (+)
XLOC_021802 tpx2 coding downstream 20756 32028574 ~ 32060885 (+)
XLOC_021803 cd63 coding downstream 58350 32066168 ~ 32085939 (+)
XLOC_021804 zgc:56699 coding downstream 93384 32101202 ~ 32107608 (+)
XLOC_021793 BX927365.3 non-coding upstream 312059 31667429 ~ 31667543 (+)
XLOC_021791 CR759830.2 non-coding upstream 545939 31433579 ~ 31433663 (+)
XLOC_021790 CR759830.1 non-coding upstream 546254 31433273 ~ 31433348 (+)
XLOC_021785 NA non-coding upstream 893651 31078564 ~ 31085951 (+)
XLOC_021805 CU041363.1 non-coding downstream 186590 32194408 ~ 32201494 (+)
XLOC_021806 NA non-coding downstream 202440 32210258 ~ 32213360 (+)
XLOC_021807 NA non-coding downstream 242538 32250356 ~ 32253077 (+)
XLOC_021812 NA non-coding downstream 472512 32480330 ~ 32487726 (+)
XLOC_021814 NA non-coding downstream 554792 32562610 ~ 32562814 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008680 pan2,LOC107671829 coding CM030126.1 CM030126.1 8730725 ~ 8756432 (-)