Fish Transcriptome and Expression Database

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model fish

XLOC_021814

Basic Information

Item	Value
gene id	XLOC_021814
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007134.7
NCBI id	CM002907.2
chromosome length	46223584
location	32562610 ~ 32562814 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044677
TCTTGCTCTGTCGATCAGACACTTGCTTCTGTTTTCTCAAAGTCTGATTATTgtgctcttcttcttcttcttcttctttccgTTTCTCTGTCACTCTCATTTCAGCCTGGTGTGACATGTCTTCTCCAGTTATTTTTCATCATTAGTTCATTATTCCCTGATTGCTCTGTCATTGGGCTCACTCTGCTTTTGTCTGGCCAGACTT

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00044677	True	205	lncRNA	0.41	1	32562610	32562814

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_021813	si:dkey-261h17.1	coding	upstream	29998	32499916 ~ 32532612 (+)
XLOC_021812	NA	coding	upstream	74884	32480330 ~ 32487726 (+)
XLOC_021811	si:ch211-66i15.5	coding	upstream	127677	32426954 ~ 32434933 (+)
XLOC_021809	taf8	coding	upstream	139262	32392461 ~ 32423348 (+)
XLOC_021810	si:ch211-66i15.5	coding	upstream	152682	32406009 ~ 32409928 (+)
XLOC_021815	NA	coding	downstream	14236	32577050 ~ 32579434 (+)
XLOC_021816	AL928610.1	coding	downstream	556196	33119010 ~ 33119124 (+)
XLOC_021817	dre-mir-205	coding	downstream	727459	33290273 ~ 33290361 (+)
XLOC_021818	si:ch211-226m16.3	coding	downstream	731819	33294633 ~ 33309622 (+)
XLOC_021819	rapgef3	coding	downstream	818340	33381154 ~ 33444055 (+)
XLOC_021807	NA	non-coding	upstream	309533	32250356 ~ 32253077 (+)
XLOC_021806	NA	non-coding	upstream	349250	32210258 ~ 32213360 (+)
XLOC_021805	CU041363.1	non-coding	upstream	361116	32194408 ~ 32201494 (+)
XLOC_021795	NA	non-coding	upstream	676697	31863739 ~ 31885913 (+)
XLOC_021820	NA	non-coding	downstream	892749	33455563 ~ 33459265 (+)
XLOC_021821	CT027694.1	non-coding	downstream	975237	33538051 ~ 33538169 (+)

Expression

Co-expression Network