XLOC_021800 (plagx)


Basic Information

Item Value
gene id XLOC_021800
gene name plagx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32011768 ~ 32020198 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043233
CGTCGGCTCGAGAACTGCTGCTGTGTTTAGAGGGAAAGAAACAGCAGGCCCGAAAAATACACACattattgaacaaaaaataagttgtccTCTGCCAACAGTTCGGGAGAATTTACCGCGGTATGGCCTAGAAACGAATTTTTCGTTTGCACCGTTGCGAGATGTAAAATGGAGGAATGCGCGTTGAATGCAACTTTTTGCGGGGATCAAAAGTTTGTGAAGTTTGAACATGCAAAAAAACAACCTTCACTCACAAGAAAAATCACCTGTCGGAGCTTCTTCTCAGATGTACAGTGATACAATCCTAGAAAGCGACCCATATATATGAGAAAATGTACCATGGCAAAGACCAGCTAAACGGCCACCTGCAGACCCACGACCCCAACAAGCAGGAGCTGCGCTGCGAGGAATGCGGGAAGCATTACAACACTCGCCTGGGTCTGAGACGCCACGTGGCCACACACGCCACCTCTGCCTCCAGTGACCTCACCTGTAAGGTCTGCCGCCAGGTGTTTGAGAGCATGCCGGCGTTActggagcacttgagcacgcacacTGGTCGGCCCCCTCCGGGGACTGTGGTACGAGAAAGGAAGCATCAATGCGAGCGGTGCGGCCGACGCTTCTTTACCCGCAAGGATGTAAGGCGCCATGCTGTGGTACACACTGGCAGACGGGACTTCCTTTGTCCACGTTGTGCTCAACGCTTTGGCCGTCGGGATCACCTCACCCGACACCTGAAGAAGAGCCACGCGCAAGAGTTGGATGCCCTGCCAACATTGCCCATTAAAGAAGAGCCCAGTCCCACCATGTGCTCTGTCGGATCTCCAAAGGACGTCACTGAGGCATTTCCGATGGCAATGTTCAACTCGCAAGGCCTTCAGAGCGCATCTACCTCAGGGGTCAGTCACCATCATCACGGGATGGTGTCTGGCCCCCTGTCCAGCCCAGTGGGTATGGGCTGCTACCTCGAGCCAAACAAGCCTCCGCCGCAGCAGTACCAGCAGACACCCAGATATCAGCCCAGCTCCACTACCTCATATCTGAAAGCAGAGATGGAGAACTTCCTGACTGAACTCCAGTGTGGGCCAATGCCTCCGCAGGCAGCTGTGGCGACTGCCGTCTCCCGGCCCGGGGACCTCCTTCCTGAGAGTTTGGGAGGTCAGAGTGCGCATTTCACCCTCAGGAACTCCGCGTTCACCTCCGCCGAGCCGCCCGCCAGCTCTGCCAACATGGACCTTTCACATCTGCTGGGCTTCCTGCCGTTCGGTCTGCCTCCTTACAGCACTCCTTTGGGATACTCCACCACCTCGGCTGCCCCCGCCGTGTCCCCGAGCCCTACCTCGCAGCTCTCTGGGCCTCTTACCTCATTTCAGCCACAGTCACTGCATGAGCCTCAGGCTGCAGGGCACTTAAACCAGCTCTCTGGTTTCTCTCCCACTCTACCTCGATTCCATCAGGCCTTCCAGCAATGATCCACTACCAACAACCTGTCCGAAACAAAAGCCCCGTTGCATCATTGCCAAGTAGCATATAGGTAATGAACTGGAGACGGTAAAGTGAAGTGGATGCGAGGTCTTCAAATGTAGAAATAGACAAGATGATCGCTAGAATAGATGGAGGTTTGCTTTTAGAGTAGTTTTAACTTTGTGGATTTTCCTAGAGGGTCTTCCGAGTAACTGTTTTGTAGTGATAAAAGAAACATATACTGAAAGGTTAGAAAAGAAATACCTCAATATTTTTTGTCAAGAAGGAAAATAATGCTGTTTCAGTGTTCTCTCCGTTGTATAATGaagcactttttttatttttttatcaacgGCACTTCAATGACTGAAGGTGTGGTCACATTTATCGTCACTTATGAAATTTCAGCTGTTTGATAATATTGTCTGAGATAGGCCATGCAAATGTTGCAAAGCATTTGCTGAGGGTagaggcgacatggtggctcagtggttagtactttcacctcacagcaaagagGTCTCTGGTTTGAACCCTGgatgggtcaattggcatttctgtgtggagtttgcatgatctccccgtgttcgagtgggtttcctccaagtgcttcagtttcccctacGTCTGAAGACATGCGGTATGTGGTCCACCCTGAAGATAACTTGtctaatagaataaaaaaaaatgcagaaaataaattacaaatacttcCTTTCCTCCTTAAACCAAGAAACAGGAGAAAAATCACTTGAAAATAAATGGCACTCAGCCCCTACAGTGTTCAGTTTACTGCTTCATAGTACAAAATTGGTGTTACCACAGTCACTACAAAGAGGTGAGAGAAGAAAGATGGAGGGTACCTTAAATAAAGTTGTCCTTCTCCCACTGCTCAAGATCTAAATCCGTCAGTCTCCGTTTTAAAAGATGCTGTGTTCTCCAAGCACCAACCACAGTGCATGCCTGTGGCACGTTCAGTCAAGTAGGGCGACTTGGAAAGAGGAcaggagagagagaaacacagcagcacagaaaagACAACCCACCAATATGCTCAGGCATAACAAGATAAATTGGATGAACAAAATTGGTCCGTGTATTAATGTTAGAGTTTACGGATGTTACCCAGTgaccggaagggcatctgctgtgtaaatagcTGGAATgtgcatatgctggaatagttatcAAGTTCCCGCTATGGCGAACCTTaaatgactaagctgaaggaaaatgaatgaatttgacaaGGGTGCTTTTATACATGACTCCGTTCATGCAAAGCCAAGCCTGCATCCAAATACTATTGAACTGATCACCACTTCAGTGTCTACATTTGTGTTAAGTGCAGTTTTTAGGAAGTCACGGAAATGTGCAGAAACCCCAAACTTCAAGAGCATTTCTGTTATAGATATTGAAACTAGAAGAGAGGCTGTTTTTTCACTCCGCTTACCTACAAATCCTGATGGTAGTAGCGATTCAACTTGCAACCAGAAACAAGCTAGACCAACTCGTATGTTATCAATAGCAACTGACTTACTTGATATAGTGTGATTGTGTTCATATTGAGGTTACCCCGAATCCCTGAACCTGTATGCCAGACGACAGAAAACTTTGAAAGTGACTTTTGCATAAGCTGGTCTTCACTTTTCAACACTTAACTGTTTTTAGCCCAAAAACCTGCCGAAAAATGTGTCCACACCACACCCAGTCAAGTTGAACTGTGGTCTTAGATGTTCCTCTCAGCTCACGGTCACACAACACAAAAAACCTACCTCTTTAAGCTGAATCTTGTCATGAAAAGGATTCAGTGGTTTGACAAGAAATGAAGCAAATCCTCATGCGAATAGCATGAAGAACATGATCTcatttttgatgtttttctttctttataggTTGCTCTACAGGTTTAGTTAGGGTTAGTTCTACAGAAAATTTGTAGAATCAGGAGATTAATTAGCATTTAATTCATTAGCTTGTGTTGATTTTAGCCTTTAGGTAAAATTTGTAGGTGCTTTGGTTGTTCACATCCTTAATGCTAATGAAAGGACTCGCTCGTCTCCTGTAAATCCCCCATCTCTCTCCGTTCATTCCAGAGTATTTTGTAAGTGAGAAGAGAAAGTATTAATTATTCTGGAATTGAAAAATCATAATGATTAGTGAATATTTGTATAAAATTACATAACCCATCCTGACAAATTCCCATTATGGGAACTAAGTAAAATATaacaacttttttgttttgtttaatgatAAAGATCATATGTGTGCCCTGAATATCTCTATAGAAAGTATAGTGGACAAATAATTTTACTTGCAAAAATTTCACACTATGAAATTTGCTCATTGTTTTGGAGTTTCAGGCTAAATAAGCTTAGCACAAGCCCTGCTATTGCTGAAGCACTTCATGTACTTCTCCAAGCAAAACCCAGGagcactgtcagaaaaaaaaagtgttatatcATGTAAATTTGAATGGCATTTTAGCACTGCCTCACTATTGTTTTGACTCAGTGTTACATTCATCAGTGACCTAAAAGGTGACTGACGGTGTATGTTGTCAAGTCCGTTTTGTTTAAGCCAAACGAAGGACTGAATTCACTTGATGAGTTTATTCTGTTAATCACATTTTGTTCATGAGCATTTCCCTCTTTGGCCGAACTCAAATGAAGCTGGCAACTCAACTCAACTGTGATGTATTGGACTCAGACTGATCTACCTCAGTGAGATGCACTCTGTGCACAGCTGTACTGTACCTTTAGTGAGAAATGTAAAGTTTCAGAGGCTGTTTAGCGCGAGTAAACAGGTGCTTTACATCTTTAAAATTTCCAAGCATTGGCATTTTTTGTTCCGAGGACtgtttgttttcattctgaaagcAGAAGTGGGTGAGTGCGAGATGGCGTATGCAGAAAGAAACAATGTTGAGGATGAATTAAGAAATAAAGTATCTTGTAGATTTTGA

Function

symbol description
plagx Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including axial vasculature; central nervous system; gut; head; and otic vesicle. Orthologous to human PLAGL2 (PLAG1 like zinc finger 2).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-839 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including axial vasculature; central nervous system; gut; head; and otic vesicle. Orthologous to human PLAGL2 (PLAG1 like zinc finger 2).

Ensembl:

ensembl_id ENSDARG00000036855

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043233 True 4432 mRNA 0.44 3 32011768 32020198

Neighbor

gene id symbol gene type direction distance location
XLOC_021799 pan2 coding upstream 3950 31979602 ~ 32007818 (+)
XLOC_021798 nemp1 coding upstream 58125 31942040 ~ 31953643 (+)
XLOC_021797 si:dkey-126g1.9 coding upstream 70856 31933583 ~ 31940912 (+)
XLOC_021796 armc1l coding upstream 92613 31912882 ~ 31919155 (+)
XLOC_021795 NA coding upstream 125855 31863739 ~ 31885913 (+)
XLOC_021801 trappc6b coding downstream 1605 32021803 ~ 32027198 (+)
XLOC_021802 tpx2 coding downstream 8376 32028574 ~ 32060885 (+)
XLOC_021803 cd63 coding downstream 45970 32066168 ~ 32085939 (+)
XLOC_021804 zgc:56699 coding downstream 81004 32101202 ~ 32107608 (+)
XLOC_021805 CU041363.1 coding downstream 174210 32194408 ~ 32201494 (+)
XLOC_021793 BX927365.3 non-coding upstream 344225 31667429 ~ 31667543 (+)
XLOC_021791 CR759830.2 non-coding upstream 578105 31433579 ~ 31433663 (+)
XLOC_021790 CR759830.1 non-coding upstream 578420 31433273 ~ 31433348 (+)
XLOC_021785 NA non-coding upstream 925817 31078564 ~ 31085951 (+)
XLOC_021806 NA non-coding downstream 190060 32210258 ~ 32213360 (+)
XLOC_021807 NA non-coding downstream 230158 32250356 ~ 32253077 (+)
XLOC_021812 NA non-coding downstream 460132 32480330 ~ 32487726 (+)
XLOC_021814 NA non-coding downstream 542412 32562610 ~ 32562814 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_13290327_13291466 PLAGX coding CI01000001 null 13289607 ~ 13293479 (+)