CI01000001_13290327_13291466 (PLAGX)


Basic Information

Item Value
gene id CI01000001_13290327_13291466
gene name PLAGX
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13289607 ~ 13293479 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_13290327_13291466.mRNA
GTATATATGTGCTCCAGGAAGGTATAGAAGCATATATAAATGTTTTACAATCATATTGCATTTTTTCTGTATATGGCTTAAAATAGTTTTTTGTTTGTATAATCTAACAACATTATGGCTATATATATATATATATATATATATATATATAATATGTATATATGCTATAAGCTATATAATATTTATAAGCAAGTTAAAAATAAAATGAAAATTCTGTCATTTGCTCATCGTTCTTCTGTGGAACACAAAAGTTATTTTAAAGAATGTTGGTAATCTAACTTTTTTGGTTACCATTAACTTATTGTGTGGGGAAATTTTTTTTCTTTTTCAAAATGTATTATTTTATGTTCCACAGAAGAAATTCATACAGGTTTGGAACAACATAAAGGTGAGTAAATGATGACAGAATTTTCATTTTTTGACGAACTATCCCTTTAATAAAGTATGTAAAAGCCATTTTGTTTTGTTTTTTTAGATGCACATATGTATTATAGAACCTTATGGTAACTGCTGCATCTTTGTGTTTGTGTGCAGAATTTTGAACATGCAAAAAAACAACCTTCACTCCCAAGAAAAATCACCTGTTGGAGCTTTTTCTCAGGTACTTGTATGTATGATTGTACTCTTATTTCTTTAACCTTCAATTATTGTGGTCACTGATCTTCTTTAACTTTTCCCAGAGTGACATATGCCCTGAAAACTACACATATAAATGAGAAAATGTTCCATGGCAAAGACCAGCTAAACGGCCACCTGCAAAACCACGACCCCAACAAGCAGGAACTGCGGTGTGAGGAATGCGGAAAGTGTTACAACACTCGCCTCGGTCTTAGACGCCACGTGGCCACACATGCCACCTCTGCCGGCGGTGACCTCACCTGTAAGGTCTGTCGTCAGGTGTTCGAGAGCATGCCTGCGTTACTCGAGCACCTGAGTACGCACACCGGCCGGCCGCCCCCGGGGACTGTGGTTCGGGAAAGGAAGCATCAGTGTGAGCGGTGCGGTCGGCGCTTCTTCACTCGAAAAGATGTGAGGCGCCACGCAGTGGTGCACACCGGCCGGCGAGACTTCCTGTGCCCGCGTTGCGCCCAGCGATTCGGCCGTCGCGACCACCTCACCCGACACCTGAAGAAAAGCCACGCGCAAGAGTTGGAGACCCTGCCGCCAATGCCCATTAAGGAGGAGCCTAGTCCCACCATGTGCTCCGTCGGATCTCCAAAAGATGCCACAGAGGCGTTTTCCATGGCCTTGTTCAACCAGCAAGGCCTTCCGAGTGCATCTACCTCAGGGGTCAATCATCATCATCATCACACGATGGTGTCTGGCCCCATGTCCAACCCCATGGGTGTGGGCTGCTACCTCGAGCCAAACAAGCCTCCGCCGCAGCAGTACCAGCAGGCTCCCAGATATCAGCCGAGTTCCACTACCTCATATTTGAAAGCAGAGATGGAGAACTTCCTGACCGAACTCCAGTGTGGGCCTATGCCGCCGCAGGCTGCTGTGGCCACTGCTGTCTCTCGGCCGGGCGACCTCCTTCCTGACGGTCTGGGAGCTCAGAGTGCCCATTTCACCCTCAGGAACTCGGCATTCACCTCCGCCGAGCCACCTACCACCTCCGCCAACATGGACCTTTCGCACCTGCTGGGCTTCCTGCCATTCGGCCTGCCTCCCTACACTACTCACCTGGGATACTCCACCACCACAACCGCCGCGTCCCCAAGCCCTACCTCTCAGCTCTCTGGGCCGCTTACCTCATTTCAGCCACAGTCACTGCATGAGCCTCAGGCTTCAGGGCACTTAAACCAGCTCTCTGGTTTTTCGCCAACTCTACCTCGATTCCATCAGGCCTTCCAGCAATGATGTTGCCCGTGTCCACTATGACTTGCCAGTCAAATGCAACAATTCTGTTGTGTCATTGCCAAGTAGCTTAAAGGGTTAGTTCACCCAAAAATGAAAATTATCCCATGATTTACTCACCTTCAAGCCATCCTAGGTGTATATGACTATCTTCTTTCAGACAAACACAACAGGAGATATATTTGAAAATATCCTGGCTCCTCCAAGCTTTATAATGGTTGTGAATGGGGGGGGGGCACATTTTGAAGCAAAAAAAAAAAAAAAAATGCATCCATCCATAATAAAAGTAATCCATACAGCTCCAGTGGGTTAAAGGGATAGTTCACCCAAAAATGAAAATTATCCCATGATTTACTCACCATCAAGCCATCCTAGGTGTATATGACGTTCTTCTTTCAGACAAATATAATCTGAGTTATATTAAATAATGTCCAGGCTAATCTATGCTTTATAATGGGAGTGGATGGTGCCCCAAAATTTAAAGTCCAAAAAAATGCACCCATCCATTATAAAAGAAGTCCACATGGCTCCAGGGGGTTAATGAAGGCCTTCTGAAGCGAAGCAATGAGTTTGTGTAAGAAAAATATCCATATTTAAAACTTTATAAATCTCCAGCTTCCGCTAACTGTCATACGTGCATTCACGAGAGAGTGGCGTCCCAGCTTATGATGTAGGACGCAGGCGCAGTGTGAGCTCCGGTGATGAACAAGGAAGCGCAGAGGAGAGAGCAAAGCAAAACAAAATACCGGTCACAAATTAAAAGTACAAAACTAGGATTTTTAAAGAAAAATGTCAGAGGATTTCGATAAAAGCCAAGAGGAGACTGAGTTTTTTGCCTAGCCGTATTTGTTTGAACCGGAATACCGACCAGGAACTCTGGGAAATGGAGGCTGCAGGAGCAGCAGCACAAACAACAGAACTGAGAAGACGGAGAGCTCATGACGCCTGTGAAAAATAGACTTGCTGCCTATCTTTAGCAAAGCAGCGCGGCGAACCGCTTCTGAAACGTGCCGTGGCGCGGCTGGTGTAAACACGAGCATTGACTAGAGTGGCCGCGGATCAGCACTGGTAGCCGCGTCGTAGCCATAATGTGCCGCTGTGGTGGTGCTCATGTGGGATATGTGAAGTTATACCAACAGAGGTTGAGAGTGTTTGCTGCCACGAATGGGCGATTGGAATGCCACCTTTAGAAGTTTTTGATGCTGCCGGTGAGAGGACTGAGTGTTAAAATATTATGCTGTTATTATGCCGTAAGCTTAGACGCCTCTTGCAGTTTAAACAAATAGAGCTGTGCAACAAACTCAAGCTCCTCTTCTCTTATATCAAAATTCTCAGACATTTCTCTTTAAAATTTCTCATTTTAGACTTCTAATTCGTGACCGGTGTTTTGTTTTGCTCTATCCTCTGCGCTTCCGCGTTCCTTACGTCATACGTCGGGTCAGAGGTTACTCTTCTGCCACAAATCGATGCGTACGGCTGTCTGCCGAAAGCTAGTTATTATAGTTAATTAAGTTTTAAATATGAATATTTTTCTTACAAAAACCAATAGCTTCTCTTCAGAAGGCCTATATTAACCCCCTGGAGCCGTGTGGATTATTTTTATTATGGATGGATTCTTTTTTTGTTCAAAATGCGCCTCCCCATTTACTACCATTATAAATCTTGGAAGAGCCAGGATATTTTTAAGTATATATTTGATTGTGTTCGTCAGAAAAAAGATATTCATATACACCTAGGATGGCTTGAGGATGAGTAAATCATGGGATAATTTTCATTTTTGGGTGAACTATCCCTTTAAAGGTAATGAACTGGAGATGTTAGGTGGGTGCGAAGTCTTCAAATGGATCCTGTAGAAATAGATGAGATGATCACTAGGATAGATGGAGTTTTGCTTTTAGAATAGTTTTAACTTTGTGGTTTTTCCTAGAGGGTCTTCTGAGTAACTGTTTTGTAGTGTTAAATGAACTCATAAAATTTATGAAATTTAAAAAAAAAAAAAACTGAAAAGTTAGCAAA

Function

symbol description
plagx Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including axial vasculature; central nervous system; gut; head; and otic vesicle. Orthologous to human PLAGL2 (PLAG1 like zinc finger 2).

NR:

description
pleiomorphic adenoma protein-like 2, partial

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_13290327_13291466.mRNA True 3873 mRNA 0.43 1 13289607 13293479

Neighbor

gene id symbol gene type direction distance location
CI01000001_13266612_13285039 PAN2 coding upstream 4314 13266543 ~ 13285293 (+)
CI01000001_13242387_13245977 NEMP1 coding upstream 43362 13242387 ~ 13246245 (+)
CI01000001_13235608_13240350 NA coding upstream 49166 13235608 ~ 13240441 (+)
CI01000001_13220895_13223877 ARMC1L coding upstream 65237 13220895 ~ 13224370 (+)
CI01000001_13160253_13167224 MYB coding upstream 121102 13160253 ~ 13168505 (+)
CI01000001_13297434_13300865 TRAPPC6B, GM13880 coding downstream 3955 13297434 ~ 13300865 (+)
CI01000001_13301404_13306593 TPX2 coding downstream 7925 13301404 ~ 13306593 (+)
CI01000001_13309045_13319725 NA coding downstream 15566 13309045 ~ 13319879 (+)
CI01000001_13329841_13334948 NA coding downstream 36362 13329841 ~ 13335302 (+)
CI01000001_13342394_13343095 NA coding downstream 48614 13342093 ~ 13343784 (+)
G19864 NA non-coding upstream 47480 13241470 ~ 13242127 (+)
G19880 NA non-coding upstream 48366 13240840 ~ 13241241 (+)
G19979 NA non-coding upstream 80634 13208625 ~ 13208973 (+)
G19972 NA non-coding upstream 85835 13203550 ~ 13203772 (+)
G19970 NA non-coding upstream 87974 13201432 ~ 13201633 (+)
G19990 NA non-coding downstream 2497 13295976 ~ 13296334 (+)
G19878 NA non-coding downstream 84161 13377640 ~ 13379606 (+)
G19993 NA non-coding downstream 88152 13381631 ~ 13381868 (+)
G19996 NA non-coding downstream 89639 13383118 ~ 13383516 (+)
G20007 NA non-coding downstream 105313 13398792 ~ 13399137 (+)
G19395 NA other upstream 1607790 11681322 ~ 11681817 (+)
G19314 NA other upstream 1730934 11501194 ~ 11558673 (+)
G19039 NA other upstream 2435624 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2749761 10538388 ~ 10539846 (+)
G18937 NA other upstream 2813218 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 219925 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021800 plagx coding NC_007134.7 CM002907.2 32011768 ~ 32020198 (+)