G19996


Basic Information

Item Value
gene id G19996
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13383118 ~ 13383516 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU22456
GTCACGAGCACGAGCAGCTTTTGCGTAGCGACTGTCTGCAAGCTATCAATGGTCAGCTAAACAGATGTATTTAAACACACACAATACACCATCGCATTATCCCCGGATAACTTTTGAATCACTATAATGAATATAGCGTATAGTGAATGATGAATAACGAATTTATGAATTCACTACGTTCGTGTTGTTTACATTATACGCACTTAGGCGCCTATTGCCAACAAAACAGACATTTGAAGCAGTTTTACTCACCATCTGCATTTCCGACTCATGACCAGGATCATTATCGCTGTGACCGCTCCATATTTCAGTTTCAAACGATCTGTAAATCCAGTGTAGAACTGGGCCTTGTTTATGAAACCATAAGCGCCAATCCTGAGAGCTCGAGCAGCCACAGAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase HERC2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22456 True 399 lncRNA 0.42 1 13383118 13383516

Neighbor

gene id symbol gene type direction distance location
CI01000001_13342394_13343095 NA coding upstream 39334 13342093 ~ 13343784 (+)
CI01000001_13329841_13334948 NA coding upstream 47816 13329841 ~ 13335302 (+)
CI01000001_13309045_13319725 NA coding upstream 63239 13309045 ~ 13319879 (+)
CI01000001_13301404_13306593 TPX2 coding upstream 76525 13301404 ~ 13306593 (+)
CI01000001_13297434_13300865 TRAPPC6B, GM13880 coding upstream 82253 13297434 ~ 13300865 (+)
CI01000001_13470823_13478394 NA coding downstream 87154 13470670 ~ 13478398 (+)
CI01000001_13514115_13517063 NA coding downstream 130599 13514115 ~ 13517063 (+)
CI01000001_13524372_13525844 NA coding downstream 139945 13523461 ~ 13525863 (+)
G19993 NA non-coding upstream 1250 13381631 ~ 13381868 (+)
G19878 NA non-coding upstream 3512 13377640 ~ 13379606 (+)
G19990 NA non-coding upstream 86784 13295976 ~ 13296334 (+)
G19864 NA non-coding upstream 140991 13241470 ~ 13242127 (+)
G19880 NA non-coding upstream 141877 13240840 ~ 13241241 (+)
G20007 NA non-coding downstream 15276 13398792 ~ 13399137 (+)
G19883 NA non-coding downstream 83027 13466543 ~ 13470559 (+)
G19860 NA non-coding downstream 99058 13482574 ~ 13487466 (+)
G20024 NA non-coding downstream 134719 13518235 ~ 13518461 (+)
G19843 NA non-coding downstream 135224 13518740 ~ 13519098 (+)
G19395 NA other upstream 1701301 11681322 ~ 11681817 (+)
G19314 NA other upstream 1824445 11501194 ~ 11558673 (+)
G19039 NA other upstream 2529135 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2843272 10538388 ~ 10539846 (+)
G18937 NA other upstream 2906729 10474984 ~ 10476389 (+)

Expression


Co-expression Network