G19883


Basic Information

Item Value
gene id G19883
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13466543 ~ 13470559 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU22329
CTTACATGTAAATTCAGATTTTGCCCTAACAAGCCATGACAAGCGTCAGTTGCTTGGTTTCTATCGTTCCACAATGAAATCTCATGGCACCAAAAACACATAATGTGGCTGTGTATTTAAAATTAAATATGCCCTGCTTGTCTGTGATACTCTGTACTTAGAAGCAAGTAAAACATAGCTTCATCTTATTTTGAAATAATGCTTAACAAACTGAAATTCTATTTTAAAAAAAATCTACACCCATTTCTGCTAATAATTTATGTTCACGGAGACTGCAGCGCCATATTTTGAATATATTTGAGTGTTTCCAGTGTCAATTTACCATTTTGGTATCAACTACTTTGGATAAACATCCTAGACTACAAATAAAAGCAAAAGCTGTTAGTCATTTTACATGTCAGTAAGACTGTCTTTTTCTGTCTAAGAGAGCAATTATTAGCCAAAATAAACTCCAAAGTAGACTTCATAAATCCATTACATCTCTCCTAGAACTCACAGAAAGCAGACCTTTTTGTACCAAAGACTACAAAAGATATAAACCATACTAAAATGCATTAACTTCTATGAAATATTCATGATCTGAGCAATTAGAAAGTGCACAGTAGCATTAATGGAGTACAAGTGATTTATCTGCCATTACATTCAAAATAAAAGGCCATTCATACCTCACTAAAGCACAGCCCTCATGATCCCTGTACAATGAGCTGTCCTCATGTGTCAGGTGGGCAAGGCGACTTTCCTTATGATGCAAGACCGACCATCCCCCTTAAGAAAGAGAAAGTGAAAACAAAGACATACATTACGATGCAATCAATACACTGCTACTTATTTCAAAGCAATTTAATTAAGACTCCAAAAGCCTGTTTGAAACATTTCCTGGAAGCTTCAGACAAGTTTGGCATATTTACCGTCAATTAGTCCATTCCCTATTTCAAGATGTTTTGTATCCAATGGATGTCATCAATTAAACTTATCGAGATGCTCTTTCCTTCCACTTTGTCTCTTGAGTGGAAATCCAAAACCATTAAAGCCTTGATGCAGCGCAATCGAATTAAGAGTCAGCTCATTTAAGAGGCAGATGATGTAATGGTACAACAAGCCACATGTGCGCACCCAATCATAGTGCTGGACGGTATAATGTGTAATGAAATGTGTTTCGTTTTACAATATATATTTGGGTGGCCATCAGTAGACAGTGCTTTAAGAGCAATTAAGAAACAATGACTCAAATGTGGTTCATCCAATCAGAATTTACCCTGGAATGCGAAAAAAATCCCATAGACTTACATTGAGCCATATATAGGGACCATAGAGGCTTGTGGCTGGGATGGCAGTAAGTAACCACCCAGAACACCCTAGCAACAACACAGCAACACCCTGGTAACCATCCATTACACCCTAGCATTATAGTGGTGAGTTTTCACTCAATAGAATCACAATAAGTTGCGTTTTTAGACATCATTGCTTTTCCATAGCCTACTGAAACAAAGCAGATGTGGTTTGCAAGGATTAGACGTGTATGACGTGCTAAAAACACTTGAATCCATTAGCATTTAATTTCCTTTGAATCTTATAAGATCTAAAACAGGAGGAGGAAAATGCTGGGGTTAATACACAGATCAATTCTTCTAATACTTTAAAACCAATTCAAAGCAAAGAAGGGTAGTCACAGCATCTTTTCCGATTCATAACAGTTCTGGGAGGGGTGGTGTTTTGTCCCGGTAGGCTGGTGGTGACCTAATTTTAGCTTGTCTAAGCAGATGAAGGGGGAGAGCGTGGGTGGTTGAGAACGTTCTCCCCTAAACCCCCATTTCAGTGTTGGCGTCCCTCACTTTCATTCAATAAAGATCTAGTCGATCATGCACGGATGCATCATCACCAAAAGTGCATTTGGAAGCACACAGCTGCTCTGGCACATGTTTACCAGTGCCAAAAAACATTTTGTCCAAAAACAAGTGTAAACTGCCTCATATTTTGAACCACTTAGCAGATGACAGGTCTGACAAACCCATAAATTGAAGTTGGAGACCTTTGGATGTCATCAAGAGGGTCCTACATCGCCATCACTAAAGGACAAAACAAGTTATATATATATATATATATATATATATATATATATAAAGAAAGAAAAAAAAAAAGCGGACTGAGGGGTTAATGTTAAATGGACAGATGTAGCCATTTAAACAATATGCATTTAATTGCATCTTAACATTACAGACAGTCATGAATGTGAACATGCTGGATTCAGACAGACAGGCTATACCCTTGCCAACATACATACAGTAATGAACCAGACAGCTGTAAACAAATGTACAACTATTAAACCTCCTGGCGATGAAAAAAGCTTCACCTCTGCCAACCTGAAACACACGTTTGCTGATGTGTTTGAGCGACTAAAATGAAGCGCTTAGCATTAGCCGACTCTCTAACGCTGTTGTACAAAAACAACCAAATTAATCATCACAACCACATAACTTACTTATCGTGTTTACTGTTTTTTTTCGTACAACAAGGGACGAATGTCTCAAAATATCTTTTATTCACTGTAAAATTACATTTAAAGTGTATGCGCTGATGCTAAGGAGCTAGCGTGGCTAACTAGCATGAAATCCAACTAGCTGACGCATGCCGAAAGAGCAGCTTTGGTCTAAAAACAGTACACCACACGTTCTTAAGCGTCACATTACATTTTCTAGCCCCTGTAAATGTCATTTAAATACCGTTCTGATCAAATAACGTCTTGTTGTGTTCATGTTTCGTGACTGCATTTGCATCCAGTTTGTGCTACTATACGGTAATTTTACAAGTCGACATGAATAAAGCGTTAAAAATCTCTCAGCAGGACTATAATACCTGTTCCCGTTGATCGCGGTATTCCTCCAAAGCTTAATGTGATTTCTGGATTTAGAGACTGATATTTGTAGTGATCTGAGAGATGGCTGAATTCTCTTCCTGAGGCGAGCGGATGAAGTCTGTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22329 True 2980 lncRNA 0.38 2 13466543 13470559

Neighbor

gene id symbol gene type direction distance location
CI01000001_13342394_13343095 NA coding upstream 122759 13342093 ~ 13343784 (+)
CI01000001_13329841_13334948 NA coding upstream 131241 13329841 ~ 13335302 (+)
CI01000001_13309045_13319725 NA coding upstream 146664 13309045 ~ 13319879 (+)
CI01000001_13301404_13306593 TPX2 coding upstream 159950 13301404 ~ 13306593 (+)
CI01000001_13297434_13300865 TRAPPC6B, GM13880 coding upstream 165678 13297434 ~ 13300865 (+)
CI01000001_13470823_13478394 NA coding downstream 111 13470670 ~ 13478398 (+)
CI01000001_13514115_13517063 NA coding downstream 43556 13514115 ~ 13517063 (+)
CI01000001_13524372_13525844 NA coding downstream 52902 13523461 ~ 13525863 (+)
G20007 NA non-coding upstream 67406 13398792 ~ 13399137 (+)
G19996 NA non-coding upstream 83027 13383118 ~ 13383516 (+)
G19993 NA non-coding upstream 84675 13381631 ~ 13381868 (+)
G19878 NA non-coding upstream 86937 13377640 ~ 13379606 (+)
G19990 NA non-coding upstream 170209 13295976 ~ 13296334 (+)
G19860 NA non-coding downstream 12015 13482574 ~ 13487466 (+)
G20024 NA non-coding downstream 47676 13518235 ~ 13518461 (+)
G19843 NA non-coding downstream 48181 13518740 ~ 13519098 (+)
G20025 NA non-coding downstream 51211 13521770 ~ 13522117 (+)
G19395 NA other upstream 1784726 11681322 ~ 11681817 (+)
G19314 NA other upstream 1907870 11501194 ~ 11558673 (+)
G19039 NA other upstream 2612560 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2926697 10538388 ~ 10539846 (+)
G18937 NA other upstream 2990154 10474984 ~ 10476389 (+)

Expression


Co-expression Network