G20025


Basic Information

Item Value
gene id G20025
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13521770 ~ 13522117 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU22485
GGAGAACTGGCACCCCGACTAAGCCTGGTTTCTCCCAAGGTTTTTTTCTCCATTTTAACACCAATTTGCCACTTGTCTGCCACCTGATGTCACCTGATGGAGTTTGGGTTCCTTGCCGCTGTCGCCTCTGGCTTGCTTAGTTGGGGACACTTGACTTGACATTTGATATTCAACAGTGCTTTGATCTGCCTGCATTGACACTATTCTTTAAGAGCTGCTGTGCAGCCAAATAATGTACCAGGTATCAGTGTAAAGCTGCTTTGACACAATCTACATTGTAAAAAGCGCTATATAAATAAAGGTGACTTGACTTGACTTGTAGTCTACTGTAATAATAGGATGTAGATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU22485 True 348 lncRNA 0.43 1 13521770 13522117

Neighbor

gene id symbol gene type direction distance location
CI01000001_13514115_13517063 NA coding upstream 4707 13514115 ~ 13517063 (+)
CI01000001_13470823_13478394 NA coding upstream 43372 13470670 ~ 13478398 (+)
CI01000001_13342394_13343095 NA coding upstream 177986 13342093 ~ 13343784 (+)
CI01000001_13329841_13334948 NA coding upstream 186468 13329841 ~ 13335302 (+)
CI01000001_13309045_13319725 NA coding upstream 201891 13309045 ~ 13319879 (+)
CI01000001_13524372_13525844 NA coding downstream 1344 13523461 ~ 13525863 (+)
G19843 NA non-coding upstream 2672 13518740 ~ 13519098 (+)
G20024 NA non-coding upstream 3309 13518235 ~ 13518461 (+)
G19860 NA non-coding upstream 34304 13482574 ~ 13487466 (+)
G19883 NA non-coding upstream 51211 13466543 ~ 13470559 (+)
G20007 NA non-coding upstream 122633 13398792 ~ 13399137 (+)
G19395 NA other upstream 1839953 11681322 ~ 11681817 (+)
G19314 NA other upstream 1963097 11501194 ~ 11558673 (+)
G19039 NA other upstream 2667787 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2981924 10538388 ~ 10539846 (+)

Expression


Co-expression Network