CI01000001_13309045_13319725


Basic Information

Item Value
gene id CI01000001_13309045_13319725
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13309045 ~ 13319879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_13309045_13319725.mRNA
CACAACCTTTATTCCATGTCTGTCAAGGGCTCTATGAAATGCCCTGTGCCTCCTTCCAATCCCACAACCCTGGAGGCGAAGGTTGATGACCTGCGGTCTAAAGTGGAGCAGCTCCTCCTGAGCTCAGGGAGAAGTTGCCCCATGTGTGCGACCTGCGTCCAGCACCACAAGCTGCAGGAGACTGTGACCAGCCAGCTGTCAGCTCAGACCAGACTCCTGGATTCTCTTGAAAGGAAAGTCTTGGAGATGAGAACAGCCCTGGAGGACCTGGCACGTGGTCTGGAGGACAGACAGTGTGAGAGAGTGTCTGTGCCTTTAGTGGCTCTACAGAGACGGAAATCCCTGCCTGTTCGAACCTCTGCGGAGGAAGTCTATGTTCGCTTAGACAGAAACCACAAAATGGTGCCCCATGCCTTTAATATACCCTCGGAGAAAGGTACTTTGCTAGAAGTCATTGAAAACAACGGGACGAGAAGAGAGGATAATCAAGCTAAAAAAGATTCAACAGAGGTCAAAGTTCAGCATGAACCTCAAATGCAAATCAAAAGAGCAAGAGAATCCACATCCAATGTAACCTCAAGTTCTGACCTATCTCAACGTCATGAGCAAGCACAGAAAATGAATAAGCCTGAAAATAAGAACCAGAGTGATATCCTGATACCCGTCATCGCTGCTTCAACGGTGACCCAGAGGATTTCTGGTATTGCTCCACCAAAAACAGAAGCCCAAGATGACAGGAAAGTGTCACTGACAAAAACTAAAACACCAAAGATGACATCAGCATCTGTTCCTGTGACGACGGCTGTTTTGCCCAGCACAATCGGGCCGAAGCATACTGAAACAGTGAATGTAACCCTACCAAATCATACCATACCAAAAACAACTGGACTGGCTGCTCCAGCAATGCCTCCTTCACTGGTACCCAACAATCCTCCCAAGCTGACTTTAACAGAAGTCCCTACAGATTCAACACAAACCCAAAAATTTCCCAAAACAAGTCTGGCTCTTCCTGCAGCAACTGCGCAGAGTTCTGGAAAATCATCAGTAAATACACCTACAACAAAAATGACAACGTCACAAGATGCAACATTGTTTCCGCCAAGCCACAAACCACCAAAACCAGCGGGTTTGAATGTTACCACAGCAACAAAAGAGGCTTCCTCCCTTAGACAAGTGCACAGCTGCCCTAACTCTTTACAGAGATTACAGGACACTGGAGGAAAGGCAGATTTGGTCCATGTGGTAACGGCACCACTGGCTAAGAAAGCGACTGAAGCAGTCGGAGCAGCAAACCACGTATCAGGTGGAATCCAGATTAAAATAAGTCCAGCTACAGACAAGAATCCAGTACAGATGAAGAGCAATATTCCTTATAAAACTTGTTTTAAAGTTATAGATGATGTTTCACCTCAGCCTGCCCCTTTCGCTCACCGGTTTGTGTCGCTAAAGTCTAACCCTCCACCCTGTGATACCTTCAGTATCCACTCCAGAGAAGTGCTGGGAGGTGGTCGTTTTGGCAAGGTGCACAAATGTACCGAGATTAAGACAGGGATGAGGCTTGCTGCTAAAATCATCAACACAAGAAATGCCAGAGAAAGGGACATGGCACTGAATGAGTTGCAGGTCATGAACCAGCTCTGTCACCCCAACATCCTCCAACTTTATGAAGCCTTTGAGGTCAAGAATCAAGTTGTGCTGATTTTGGAGTATGTGGAGGGAGGTGAGTTGTTTGAGAGAATCGTGGATGAGAGCTGTCCGCTGACTGAGGTGGATGCCATGGTGTTTGTGAAACAGATCTGTGAGGGAGTCCAGTACATGCACCAGATGTATGTACTTCATCTGGACCTTAAGCCGGAGAACATCCTTCTTGTTAATCATTCTAGCCATCAGGTGAAAATTATTGACTTTGGACTTGCCAGGAGATATAAACCACGAGAGAAGCTCAAAGTTTCATTCGGAACGCCTGAATTTTTGGCTCCGGAGGTGGTGAACTTCGATTTTGTCTCCTTCCCTACAGATATGTGGACATTGGGAGTCGTCACATACATGCTCTTAAGTGGCCTATCTCCTTTTCTGGGTGATGATGACGGCCAGACCCTCAACAACGTGCTTATGGGCAACTGGTACTTCGATGAGGATGCGTTTGAGCATGTGTCTGCTGAGGCTCGGGACTTCGTCACCAACCTGCTTATCAGAGAAAGAAGTGAGAAAGCCAAGAGCAGCAACATCGTGCTCAAGTCACAGGTTCTCCTCAAGAAGTATATGGCCAGAAGAATGTGGAAGAAAAACTACATAGCCATTGCTGCAGCCAATAGGTTTAAGAAGATCGGAAGTTCAGGTTCCCTGACAGCGCTTGGAATCTGAGAGTATCCTGTGCTCACTACGGGAGCTTTTATAAAACGCAGATCATGTCTTTGTATTGCTGTGCTGCATTGCCACCCACCTTTCATATCTGAAAACACTCACTGGCTGCCAATATATTCATTTAACTGCATTGGTAAAACATATCAAACGTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_13309045_13319725.mRNA True 2518 mRNA 0.47 15 13309045 13319879

Neighbor

gene id symbol gene type direction distance location
CI01000001_13301404_13306593 TPX2 coding upstream 2452 13301404 ~ 13306593 (+)
CI01000001_13297434_13300865 TRAPPC6B, GM13880 coding upstream 8180 13297434 ~ 13300865 (+)
CI01000001_13290327_13291466 PLAGX coding upstream 15566 13289607 ~ 13293479 (+)
CI01000001_13266612_13285039 PAN2 coding upstream 23752 13266543 ~ 13285293 (+)
CI01000001_13242387_13245977 NEMP1 coding upstream 62800 13242387 ~ 13246245 (+)
CI01000001_13329841_13334948 NA coding downstream 9962 13329841 ~ 13335302 (+)
CI01000001_13342394_13343095 NA coding downstream 22214 13342093 ~ 13343784 (+)
CI01000001_13470823_13478394 NA coding downstream 150791 13470670 ~ 13478398 (+)
CI01000001_13514115_13517063 NA coding downstream 194236 13514115 ~ 13517063 (+)
CI01000001_13524372_13525844 NA coding downstream 203582 13523461 ~ 13525863 (+)
G19990 NA non-coding upstream 12711 13295976 ~ 13296334 (+)
G19864 NA non-coding upstream 66918 13241470 ~ 13242127 (+)
G19880 NA non-coding upstream 67804 13240840 ~ 13241241 (+)
G19979 NA non-coding upstream 100072 13208625 ~ 13208973 (+)
G19972 NA non-coding upstream 105273 13203550 ~ 13203772 (+)
G19878 NA non-coding downstream 57761 13377640 ~ 13379606 (+)
G19993 NA non-coding downstream 61752 13381631 ~ 13381868 (+)
G19996 NA non-coding downstream 63239 13383118 ~ 13383516 (+)
G20007 NA non-coding downstream 78913 13398792 ~ 13399137 (+)
G19883 NA non-coding downstream 146664 13466543 ~ 13470559 (+)
G19395 NA other upstream 1627228 11681322 ~ 11681817 (+)
G19314 NA other upstream 1750372 11501194 ~ 11558673 (+)
G19039 NA other upstream 2455062 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2769199 10538388 ~ 10539846 (+)
G18937 NA other upstream 2832656 10474984 ~ 10476389 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021802 tpx2 coding NC_007134.7 CM002907.2 32028574 ~ 32060885 (+)