CI01000001_13220895_13223877 (ARMC1L)


Basic Information

Item Value
gene id CI01000001_13220895_13223877
gene name ARMC1L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13220895 ~ 13224370 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_13220895_13223877.mRNA
ATGGCGTTTATGTTCACAAAGACGAGCGTATTATTCACTTTACCTCTTTCCTGTATCACGCTTTCCGTGTGCAGAGGAGGGGTGGAGCCTGTAGCCAATCAGATTGAACGATTTAGAAACGTCGTCAAGAGCCTTCGACCAATCATTTTGTTTGAATACAAGCAGTGGGAAGTTTTGTATTTTGTGTGTTCGCTGTTAAAAGTAACGGTAGTGGTATCCACAAAAATGATGGATGCATTATCAGTAGTCACACAGCTGCGGGACTTGGCATCTGAACCACAGAATCGGGAGGTGATTGTTCAGGACCAGGGTTGCCTTCCAGGACTAGTGCTGTTTCTAGACCATAAGGACTCTAAAGTGCTTTTTGCCACCCTTCAGACTTTGCGGTACCTGGCTGAATCGCCCCGCAACATCAACACCATGAAAAATGAGCTTGGCATGATGAGACGGGCTTGTCAGACTCCAGAGCAACAGAAGAGGAGGAACAAACCACAGTTCTTCATCAACAGCTCCAACAAGAAAGCCAAATCAGTTACCCTGCACATACAAGGCTTAGATGGGGCAGATCAGAGAGGTGTCTGTGAAGAGGCCCTTTTGAGGGTCAAAGGTGTAATCAGTTTCACGTTCCAGATGGCTCTGAAGAGATGTACCGTACGCATCCGTGCCGACCTGTCCACTGAGAGTCTGGCCACTGCTATTGCTGCCACAAACGTGCTTTCAGCTAAACAGGTGGTGAAAAATGAAAATGGAGAAGAGGTTCTCATTCCGCTCAGCACCTCTGGCTCAAAGGTAGAAGAGAATTCCCACCTGCCAGATTACCTGCCAGAGGATGAGAGTCCAGAGAAAGAGCTTGACCGTGCAGTGTCCCGTACTGGTGCTAAACAGGACACTGGTGGCAGCTGGCTGAACACAGCAGCCAGTTTCCTCACTAAAACCTTCTACTGGTAAAGCTTGAGTTTCAGAGGCTGTTCCTGTCTGAGTTTGAACCTCAACATTTTTAAGGAAGATCGGCCTAGAAGAGCAACTCACACCACTGTCAGAGTCTAAAGCACTAGGGAAGGTCGAGTAACTGACAGATGTGCTTTTACAAGCTACAAAAGGTGTCGTTCAGTTTATGAGCGCAACCTTTCACACAAAGCATCAGCTTCCACCTGATGTATGAGATCTCAGCCTCATCATAACTCAGTATTGAAAACTGTAGATGTTGGGGTCATGTTGTACATTTTATATTATGTTAATGAAAACATGTCTTTCATCCCTCTTAGGGATCAGAAATTTTCTGTTTCTGCTGTCAAGTTTGTCTGTATTTTCTTTCCACTTGATTTCTTGTAAATATTTCCATTTTGGTGTTTTATAAGGGGAAAAGCATCTTAATTCTCATCTAAAAATGGAAACAATTGAAAAACAGATTAAATACATGTTTGATGCTGTTTTGTGTAAA

Function

symbol description
armc1l Predicted to enable metal ion binding activity. Predicted to act upstream of or within metal ion transport. Predicted to be located in mitochondrial outer membrane. Is expressed in digestive system; pectoral fin musculature; proliferative region; and retina. Orthologous to human ARMC1 (armadillo repeat containing 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_13220895_13223877.mRNA True 1441 mRNA 0.44 8 13220895 13224370

Neighbor

gene id symbol gene type direction distance location
CI01000001_13160253_13167224 MYB coding upstream 52390 13160253 ~ 13168505 (+)
CI01000001_13011184_13014251 TBPL1 coding upstream 206633 13009419 ~ 13014262 (+)
CI01000001_13002416_13005974 NA coding upstream 214862 13002214 ~ 13006033 (+)
CI01000001_12991367_12993048 NA coding upstream 227452 12991276 ~ 12993443 (+)
CI01000001_12926362_12928572 RPS12, RGD1561102, RPS12-PS2, RPS12P4, GM4925, RPS12.S coding upstream 292316 12925414 ~ 12928579 (+)
CI01000001_13235608_13240350 NA coding downstream 11238 13235608 ~ 13240441 (+)
CI01000001_13242387_13245977 NEMP1 coding downstream 18017 13242387 ~ 13246245 (+)
CI01000001_13266612_13285039 PAN2 coding downstream 42173 13266543 ~ 13285293 (+)
CI01000001_13290327_13291466 PLAGX coding downstream 65237 13289607 ~ 13293479 (+)
CI01000001_13297434_13300865 TRAPPC6B, GM13880 coding downstream 73064 13297434 ~ 13300865 (+)
G19979 NA non-coding upstream 11922 13208625 ~ 13208973 (+)
G19972 NA non-coding upstream 17123 13203550 ~ 13203772 (+)
G19970 NA non-coding upstream 19262 13201432 ~ 13201633 (+)
G19969 NA non-coding upstream 19590 13201102 ~ 13201305 (+)
G19968 NA non-coding upstream 20100 13200579 ~ 13200795 (+)
G19880 NA non-coding downstream 16470 13240840 ~ 13241241 (+)
G19864 NA non-coding downstream 17100 13241470 ~ 13242127 (+)
G19990 NA non-coding downstream 71606 13295976 ~ 13296334 (+)
G19878 NA non-coding downstream 153270 13377640 ~ 13379606 (+)
G19993 NA non-coding downstream 157261 13381631 ~ 13381868 (+)
G19395 NA other upstream 1539078 11681322 ~ 11681817 (+)
G19314 NA other upstream 1662222 11501194 ~ 11558673 (+)
G19039 NA other upstream 2366912 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2681049 10538388 ~ 10539846 (+)
G18937 NA other upstream 2744506 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 289034 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021796 armc1l coding NC_007134.7 CM002907.2 31912882 ~ 31919155 (+)