CI01000001_13011184_13014251 (TBPL1)


Basic Information

Item Value
gene id CI01000001_13011184_13014251
gene name TBPL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13009419 ~ 13014262 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_13011184_13014251.mRNA
CTATAAAACTCACCTGTTTCTGTGTTAAACTCATAGCAGGTGAAATGGAAAGAGGACCTTTAGAGTGAAGGCTGACTTTGATATTGCCTGATAGAAAAGAAAAATGTATAAAAAATGCTGACAAAACATAAAAGCTTATTTAAAAAATGTATTAAAAATCTCTTTGTTTTGTCCTATGTCTCATGATTAAAGGGATAGTTCACCCAAAAATGAGCATTCTGTCATCATTTGTCAGGTTTTTCCAAACCTGTATGAGTTTCTTTCTTCTGTTGAACACAAACGAAGATATTTTGAAGAACGTGGGTAAATGAACAGTTGATGGGCTCCATTGCCTTCCATGGAAAAAAAATACTATGGAAGTCAATGGGGCCCATCAACTATTTAGTTACTGACATTCTTCAAAATATCTTCGTTTGTGTTCAACAGAAGAAAGAAACTCATACAGGTTTGGAACAGCTTGAGGGTGAGTAAATGATGACAACATTTTCATTTTTGGGTGAACTATCCCTTTAAGAATGGGGCATTTTTGACTTCATTTATTAAATTCAATATCATGATCAAGTTTTAAAATATTAAAACACATTAAAAAAATTAATGTTTATCTTTATAAATAGCCTGTGAGTTATGAAGGAAAAATGTTATACACACTTTATTATACTATTAAAATTATGTCACTGTTCTCCTCCCATCCGCTTGGAGGCGCTGTAGCGTGTTTGAATCGACAGTTTCTCATCTCGCGCAGGAACTAAGGCATCCTTGACAACAATCGCCGGTTGACTGTTGTTTGTGTTGGCGCTTTTGTTTACTTTTTGTGCTTTCTCGACCGTTCATTTTATCCATATAGTGTTTTAAACATTCAAATAATCGTTTTAAAAACGTTTTACCACATTATAGCAAAAAATTCTCTCAGACGCACCATTTGCCGCCCCATATCACTCAAGTAAGTTAAAGTTTTATTAGCCTAATGTGTTTGCCATTCATTTAGTAGTTAACTGAAACTCTCTATGTTGTTAAACCTAGTTTATGATCGCTTTTGTGTGAATATTGACCTATAACATTTTATCTCTAACAGCGCTACTCTGTTATTTACTCTTTGAGCTGAAACAGCTAGCAGGCACGTTTAATGTTATTGTGTCATAGTAATGAATTGCATGTGTTGCTTTGTATAAATGTTTATTGAATGAATAAATGGTGCTGAGGAAAAATATGAGCATGAAATGTAGCTAAATTTGATAGAAGTTGCTGCAGAAATATACTAAGGAAGTACAACGTCCTGCAAGCCTATTGCTTTGTTATTTGATCTGTTCAAACTCCGTGCCAGTGCTTTGTGGCCACCTTCATTTTACGTTAAAAAGAGAGTGGAAGATGTAAACTAATGGCTGGTTTGGCACTGTTAAAGTAGGCATGTTTCCCCCCCCCCACTTTATTGCATATATAAACAGATGTTTTTATTCAAAGTGACTTACAGTTTATTTATTGAAAGGATCATTCCCCATGGAAAAGCTGTGGTTAAGTGCCTTTATTTTGGGGACAATGGTCTTAGTTAATGAATCACCACCTATTGTGGGATTTAAACCTAGAAACCTTAAGTTATAGCCATCTAAGACATGTCACCTCATAAGTTAGATTCAGCAAAATGAATACATGTAATGTAAAACCACCCACTCCTTAAAAAAACATGTTTATGTGTTTTTCAGGTTGTGTTCTGTAACGTGACATGCATCTGTAAAGGGGCTGTCAAGCTTAAAACATCTACAGCGGCTCCATGGACCCCAGTAACGATGTGGCGCTTGATATCATCGTTTCCAATGTCGTATCTGTCTTCAGAACCAGGTGCCATCTAAACCTGCGTACCATCGGCCTAGAGGGGACTAATGTCATCTACAAGCCTGAAGTGGGAAAAGTCCTGATGAAGCTGCGAAAACCACGTATCACTGCCTCTATATGGTCATCAGGGAAAATTATTTGCACTGGAGCAACAAGTGAGGAGGAAGCCAAACTGGGTGCTCGACGGTTGGCCCGCTGTCTGCAGAAGATTGGATTCAAGGTGAGATTCTCGGACTTTAAGGTTGTCAATGTGCTGGCTGTGTGCTCCATGCCTTTTCAGATCCGTCTCATTGAGTTCACTAAGAATAATCGGCCCATTGCCAGCTATGAACCCGAGATCCATCCTGCTGCGTCATACAGAATCAAAAACCTCAGGAGTACAGTGCAGGTGTTTTCCACAGGCAATATCACTGTTACAGGGTTTTGTCTGGAATGTATTGCAAAAAATCTAGACGGTTGAAGAACCTTTTA

Function

symbol description
tbpl1 Predicted to enable general transcription initiation factor activity. Involved in embryo development and transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Orthologous to human TBPL1 (TATA-box binding protein like 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K03120 TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_13011184_13014251.mRNA True 2298 mRNA 0.38 6 13009419 13014262

Neighbor

gene id symbol gene type direction distance location
CI01000001_13002416_13005974 NA coding upstream 3386 13002214 ~ 13006033 (+)
CI01000001_12991367_12993048 NA coding upstream 15976 12991276 ~ 12993443 (+)
CI01000001_12926362_12928572 RPS12, RGD1561102, RPS12-PS2, RPS12P4, GM4925, RPS12.S coding upstream 80840 12925414 ~ 12928579 (+)
CI01000001_12912442_12919516 SH3BGRL2 coding upstream 89428 12911614 ~ 12919991 (+)
CI01000001_12873759_12874041 NA coding upstream 135330 12873448 ~ 12874215 (+)
CI01000001_13160253_13167224 MYB coding downstream 145991 13160253 ~ 13168505 (+)
CI01000001_13220895_13223877 ARMC1L coding downstream 206633 13220895 ~ 13224370 (+)
CI01000001_13235608_13240350 NA coding downstream 221346 13235608 ~ 13240441 (+)
CI01000001_13242387_13245977 NEMP1 coding downstream 228125 13242387 ~ 13246245 (+)
CI01000001_13266612_13285039 PAN2 coding downstream 252281 13266543 ~ 13285293 (+)
G19885 NA non-coding upstream 18294 12990593 ~ 12991125 (+)
G19910 NA non-coding upstream 19497 12988183 ~ 12989922 (+)
G19826 NA non-coding upstream 67115 12935747 ~ 12942304 (+)
G19825 NA non-coding upstream 79212 12929812 ~ 12930207 (+)
G19758 NA non-coding upstream 85218 12921005 ~ 12924201 (+)
G19923 NA non-coding downstream 53786 13068048 ~ 13068268 (+)
G19924 NA non-coding downstream 54510 13068772 ~ 13069012 (+)
G19932 NA non-coding downstream 72059 13086321 ~ 13086557 (+)
G19935 NA non-coding downstream 76910 13091172 ~ 13091432 (+)
G19846 NA non-coding downstream 77582 13091844 ~ 13104246 (+)
G19395 NA other upstream 1327602 11681322 ~ 11681817 (+)
G19314 NA other upstream 1450746 11501194 ~ 11558673 (+)
G19039 NA other upstream 2155436 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2469573 10538388 ~ 10539846 (+)
G18937 NA other upstream 2533030 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 499142 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021792 tbpl1 coding NC_007134.7 CM002907.2 31596194 ~ 31605592 (+)