CI01000001_13160253_13167224 (MYB)


Basic Information

Item Value
gene id CI01000001_13160253_13167224
gene name MYB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13160253 ~ 13168505 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_13160253_13167224.mRNA
TGTTTACAGTAGCGACGAAGATGATGATGATGTGGAGATTTATGATCACGACTACGATGGTCCTCATGCCAAGACAGGAAAACGACACCTCGGCAAGACACGCTGGACCCGTGAGGAGGATGAGAAGTTGAAGAGGCTGGTAGAGCATCATGGTTCAGAAGACTGGAAAGTCATTGCCAGCTTTCTACCTAATCGAACAGATGTTCAGTGTCAGCATCGTTGGCAGAAAGTTCTCAACCCTGAACTTATCAAAGGACCGTGGACGAAAGAAGAAGACCAACGGGTGATCGAGTTGGTTCAGAAGTACGGCCCCAAACGGTGGTCTGTGATTGCGAAGCACTTAAAGGGGCGGATCGGTAAGCAATGTAGAGAACGCTGGCACAACCACCTGAACCCTGAGGTGAAGAAGACTTCCTGGACTGAGGAGGAAGATCAGATCATCTATCAGGCGCATGAGAAACTTGGAAACCGATGGGCTGAGATTGCCAAGCTACTTCCGGGCAGAACCGACAATGCCATAAAGAACCACTGGAACTCCACTATGCGGCGGAAGGTCGAGCAAGAGGGCTACCTTCAGCATGCTGCTAAAGTCAGCCCCACTCCACTAAACAACAGCTACGTTAAACCTCACCTCCTAAACTACAGTCACACACCAACCAACACATCCATGCCTGCCTCTTCCATGAGCAATCAGTATCCGTACTACATGCCTGACTCACAACGGGTGCCATTTCCACTTGCTCTTCAATTGAACATCTTGAACATTCCTCAACATGGCACTGCTCCTATCCAGAGACACTACAGCGATGAGGACCCCGAGAAAGAAAAGAGGGTGAAGGAGATTGAGATGCTCTTGATGTCAACAGAAAATGAGCTAAAGGGACAACAGGCACTACCACAGATCTCCATGAACGGCTACAGTGGGTGGAACAGAGGCTCTTTGACGGACACCTCGGTCGGCGTAGTCGTTTCAGTCCCGGCTCCATCCCTAGACCAGGGATGCCTTCCAGAAGAAAGCGCCCATGGCAACACAAACAGCCCAAACAATGACTCCAGCTCCAGTTTACCAGAGTTCATTGACGCCATTGATTCGGCCCCGTCTATCTGGGCCAACTTACACTCTGATAGGAGGTTGCCTAAAACGGAGGCTCAATCCAATCAGGGTTCGCCCACCCACAACGACGACAGCACATTTCTTTGCTCTACCCCCAAACTTTCAGCCATCAGACACCTGCCTTTTTCTCCCTCTCAGTTCTTTAATGCATCAGTGAGCCCAGATTCAGAAAGTCAAAATTTACCGGTCACACCCTCACCTGTCTGCTCCCAGAAAGCACTGCAGCAAGACCTTGCTCTTCGGCCTCAGAAGGAAAATGAGCTGTTCCGGACCCCCAACCTGAGGCGTTCTATCATGGAGTGCTCTCCTCGCACGCCCACCCCATTCAAATCCACACTGACAATGCAAGACACCAAATACGGACCGTTGAAAAGGGCCCACAGCCCTTCACTGGACTCTGGGGTGGTTGGTACTATCAAACAGGAGCCTCAGGAGTGTGAGATCAGCGTCGGGGGGGTGCATCTGGACCAGCCCCCCCTGAAGAAGATCAAACAGGAGGTGGATTCGGCTTGTCTGCAGTGGGAGGAGCAAGATCTCCACACCCAGCTGTTCCCTTCCAGTGGCTCCACCCATGACATGCCTGATCTGTTGACTAGCTCTGTGCTGATGCTTCCCAATGCAGAGAAAACTGAGGACGGACACAAAGCCGCCCAGCTGCCCCGCAGAGCCATGGGAAGTCCTATGCAGCAGTTGAGCACATGGGAACAGGTGCTTTGTGGGAAGACGGAAGAGCAGACGATGCCCTCTGAAGCCACGCACAAATACCTCAGCAATTATTCTTCACGAGCACTGGTCATGTAAAGAGACAGATAGAATGAGACAAAGACAAAAATAGAAAGGGAAGAAGGAGGGAGAGTGAAAGAAGACAATCATTCTGAAAAGAAGTAAAAGAGGAACACTCCAACACTTCTGGTACATTATTTGGGAGAGGCTCAAAGCCAGTTTGTAGACTGCACAGTTGATGTTAGTCGCCATTGTTTAAGCTGTGCCGTCGCTTATTTGATTCAAGCAACCAAAGACATTTTACATGTTGTGTTTTTCTACCTTTTTTGATTTCAATTTAATAATATTGTATTATATATTTTGTATTATATATGGGAAATGAATTCTCTATGTGGGTTCTAATTTTATGGATTTTAATATAAGGAACAATTTGCAGTAATTTATTATTATTTTGTATTAAGAATAATAATTAACTACGATGGGCGCCTTTGCCAGTGTTTGACCCCAGTATTGCTCACTTCTTAATCGCTAAATGTGTGTTAATTGTAAGGAGCGTGTATCCTCCTAGCATTATCAGAATCATACACCTAAAACTAGACAAGATTTGTACTCCGTATCTGTGGGAGTCCCACAGAACTGCCCTTGCAGAGATATGTATTTCGTATGTATTTCAGCCAAATGCCTAAAAGCACTGTTATGTATTCATGGCCAAAACAAACCATGCCCAATGCCTAAAAATGACTTTGCCAAGTTTGAAAATGCAAGTTTGCCTAATGTAGATCTTAGGTGATGTATCTAGCATAAAAAGATACTCTGTCAGTTTAGTAGTGTTGCCATTTCAAAAGCGTTCAAGATCGAAACCACAACGTTGAGCTTTCATTGTATTAGCACTATTTCAGGTTTTAGATCAACTATGCAAAAGATTTCAACAGAACAAAAAGTGTTTGTTTTTTTACAGTTTTTGTATTTGCTAAATAGGAAAAACAAGGTTTACCAAGCATTTTCAAGTCAAGGGTTTAAATGGTAACAAATTTGCCTTTGAGATGATGTAACATTTCTTGATCATGTTTTCTTAAACACTTTTTTTTTTATGTCAATTTGTAATCAGATTTACATTTGGTATTTTTTACTTTTTGAAACACTGAAATGATTGTTGCTTTTATACCTAGTCGGCTTGTTTTTGATATTTCAATCAGCCTTTGATACTAAGATTGCAGTGTCCAATCAAAAGCATTTAGCAATAACGTTTTTGTTATTCGCTGCCTTTTTGTATTAGCTTCAAGTACAAACACTTTTTTTTTTACACTGATTATGAACTTTTCATACATTTTTATACAAACTTTTATAACTGCCTTGTAA

Function

symbol description
myb Enables DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including definitive hemopoiesis; hematopoietic stem cell migration; and regulation of neutrophil differentiation. Located in chromatin. Is expressed in several structures, including head; hematopoietic cell; hematopoietic system; mesoderm; and vasculature. Orthologous to human MYB (MYB proto-oncogene, transcription factor).

NR:

description
transcription factor cmyb

GO:      GO:0044212, GO:0000278, GO:0060271, GO:0043565, GO:0035701, GO:0005634, GO:0030154, GO:0006355, GO:0001654, GO:0045893, GO:0060216, GO:0001135, GO:0043009, GO:0003677, GO:0000981

KEGG:

id description
K09420 MYB, C-MYB; transcriptional activator Myb

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_13160253_13167224.mRNA True 3196 mRNA 0.44 15 13160253 13168505

Neighbor

gene id symbol gene type direction distance location
CI01000001_13011184_13014251 TBPL1 coding upstream 145991 13009419 ~ 13014262 (+)
CI01000001_13002416_13005974 NA coding upstream 154220 13002214 ~ 13006033 (+)
CI01000001_12991367_12993048 NA coding upstream 166810 12991276 ~ 12993443 (+)
CI01000001_12926362_12928572 RPS12, RGD1561102, RPS12-PS2, RPS12P4, GM4925, RPS12.S coding upstream 231674 12925414 ~ 12928579 (+)
CI01000001_12912442_12919516 SH3BGRL2 coding upstream 240262 12911614 ~ 12919991 (+)
CI01000001_13220895_13223877 ARMC1L coding downstream 52390 13220895 ~ 13224370 (+)
CI01000001_13235608_13240350 NA coding downstream 67103 13235608 ~ 13240441 (+)
CI01000001_13242387_13245977 NEMP1 coding downstream 73882 13242387 ~ 13246245 (+)
CI01000001_13266612_13285039 PAN2 coding downstream 98038 13266543 ~ 13285293 (+)
CI01000001_13290327_13291466 PLAGX coding downstream 121102 13289607 ~ 13293479 (+)
G19846 NA non-coding upstream 56007 13091844 ~ 13104246 (+)
G19935 NA non-coding upstream 68821 13091172 ~ 13091432 (+)
G19932 NA non-coding upstream 73696 13086321 ~ 13086557 (+)
G19924 NA non-coding upstream 91241 13068772 ~ 13069012 (+)
G19923 NA non-coding upstream 91985 13068048 ~ 13068268 (+)
G19952 NA non-coding downstream 2576 13171081 ~ 13171419 (+)
G19963 NA non-coding downstream 29655 13198160 ~ 13198366 (+)
G19964 NA non-coding downstream 29871 13198376 ~ 13198666 (+)
G19965 NA non-coding downstream 30175 13198680 ~ 13199056 (+)
G19967 NA non-coding downstream 31494 13199999 ~ 13200235 (+)
G19395 NA other upstream 1478436 11681322 ~ 11681817 (+)
G19314 NA other upstream 1601580 11501194 ~ 11558673 (+)
G19039 NA other upstream 2306270 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2620407 10538388 ~ 10539846 (+)
G18937 NA other upstream 2683864 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 344899 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location