RNA id: TCONS_00043244


Basic Information

Item Value
RNA id TCONS_00043244
length 3348
RNA type mRNA
GC content 0.43
exon number 13
gene id XLOC_021802
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32028574 ~ 32060885 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTTTGGACAGAGACCGTAAAACGATGCCCCATGCTTTTAATAAGCCCTCAGAGAAAGGTATTTTGCTAGAGGTCAATGAGAACAATGGAACAAGAAGAGAGGACCATCAAGCCAAGAAAGATTCAACAGAGGTGAAAGTTGAACCTACATTGCCAATTAAAAGGGAAAACGGCACATCCAGCGTAACCCCAAGATCCGAGCAAACACAGAAAATGAATAAGACTGAAAATAAGAGCATGCCACCAACCCAGAATCATGTCCTGATACCGATCAGAACTCCAGCCATTGCTTCCCAAAAAACAGAAGCCCAAGAAATCAGGAAAGTGCCGCCACCAAATATTAAAGTTCCTGTAGCAGCGGCTGTGATTATTCCCAACACAACTGGACAGACGTGCACTGAATCTGTGAATGTAACCCCAGCAAATCATATCTTACCCAAGACAACCGTCACTCCTGCAGCGCCACCATTAGTAAACAACAATACCCCCAAACTCACTGTATCGGAAGTCCCTAAAGACTTCAAACCATCCCATAAATATCCACAAACAAGTCTGCCACCATCAGTAGCTGCACAGAGGTCTGAACAAACACCAGTAAATATGcctacaacaaaaacaacaacaccacAAGATGCAGCATTGTTTCCTCCAACCCACAAACCACCTAAAACAGTGGGTTTAAGTGTTACCACTGCAACAAAAGAGGCTTCCTCCCTCAGACAAGTGCACAGCTGCCCCAATTCTTTACAAAGATTACAGGTCCCTGGATTAAAGGCAGATTTGGTCCACACTGTAACATCAACACTGACTAGTAAAAAAAGAGCAACTGAAACTGTTGGAGCAGCAAAGCTAACATCAGATGGAATACAGATTAAAATAAGTTCAGCTACAGACAAGAATTCAGCACAGACAAAGAGCTACAACCCTCCTAAACTCTGTTTTAAAGTTATAGATGATGTTTCACCTCAGCCTGCTCCTTTTGCGCACCGGTTTGTGGCGCTGAAGTCTAGCCCTCCGCCCTGTGACACCTTCAGTATCCACACCAGAGAAGTGCTTGGAGGTGGCCGCTTTGGTAAGGTGCATAAATGTACGGAGACTAGAACGGGGATGAGGCTCGCTGCCAAAATCATCAACACAAGAAATTCCAAAGAAAGAGACATGGCACTGAATGAGATGCAGGTCATGAACCAGCTGAGCCACCCCAACATCCTCCAGCTTTATGAGGCCTTCGAGGTCAAGAATCAAGTCGTGCTCATCCTGGAATATGTGGAGGGAGGCGAGCTGTTCGAGAGGATTGTGGATGAAAGCAGTCCGCTGACGGAGGTGGATGCGATGGTGTTTGTGAAGCAGATCTGTGAGGGCGTTCAGTACATGCATCAGATGTACGTGCTTCATCTGGACCTTAAGCCAGAGAACATCCTCCTTGTTAATCGCTCTAGCCATCAGGTGAAAATTATCGACTTTGGACTAGCCAGGAGATATAAACCACGAGAGAAGCTCAAAGTTTCATTTGGAACGCCTGAGTTTTTAGCTCCAGAGGTTGTGAACTTTGATTTTGTCTCCTTCCCTACGGATATGTGGACTTTGGGAGTCGTCACTTACATGCTTTTAAGTGGCCTCTCTCCTTTTCTGGGTGATGATGACGGCCAGACCCTCAATAATGTGCTCATGGGGAACTGGTACTTCGACGAGGACGCTTTTGAGCACGTGTCTGCTGACGCGCGGGACTTTGTTTCCAACCTACTGATCAGAGAAAGAAGTGGTCGTATGAGTGCCACACAGTGTCTCAAACACCCATGGCTCAACAACATCTTTGAGAAAGCCAAAAGCAGTAACATCGTGCTCAAGTCACAGGTTCTCCTCAAGAAATACATGGCCAGGCGATTGTGGAAAAAAACTACATAGCTATCGCTGCAGCAAATAGGTTCAAGAAGATTGGAAGTTCAGGTTCCTTGACCTCACTTGGAATCTGAGTATGTTCAAACTCTTATAATACACAGGTCATGTCTTTGTATTGCTGTGCCGCACTGCAAATCACCTTTCACCTCTGAAGTTTGACTGGCTGCTGATTTTAATTGCATTGGTAAACCACACAAATCTATAATGTGCAAGAaccatttatttatacaatacatATATATCTTGTATATTGTTTCAAGCATTCATAAATTAAACGTATAGctataaacactcaccggccactttattgggtacaccttactagtacagggttggacccccttttggcttcagaactgccttaatcctttgtggcatagattcaacagggtaccggaaatattcctgagattttagtccatattgaagTGATAGCagcacacagttgctgcagtttAGTTTGCTGtgcatccatgatgcgaatctcacgTTCCACCACATCCGACAGGTGCTCAGTTGGAttgtgatctggtgactgtgaggaccatttgagtacagtgaactcattgtcatgttcaaaaaaacagtctaagatgatttgctctgcatgacatggtgcattatactgctgaaagtagccatcggAAGATAGGTAGGCTtaggcgttgacacaatgctcaattggtactattgggcctaaagtgtgccaagaaaatatcctccacactattacaccaccaccacgcTGAActattaatacaaggcaggatagatccatgcttcaTGTTGTAGACGCCAAAATCTGACCCTGCCATCCTAATGTCACAGCAGAAGTCAAGACTCAATCGGCcaagcaacatttttccaatcttccattgtccaattttggcgAGCCTTTGCAAATTGTATCTTCAGTTTCctgactaaatgcattgagttggtgccatgtgattgactgattagaactttgcgttaatgagcagttggacagttgtacctaataaagtggccagtatgGGAGAGCATGTGGCTAAAATGGAAAATGTCCTAAATAAAAGGGagcaacttttcttttttttgatctGATAATGCCTAagattttattattcatattttaaatggcCAGTAAATGAAGACCACGTATCCAAAATGTGACAGGAAAATAATGGTGGTCTGACATATTTTACGAGAAATAATTGTTGGTTCATGAACAGGAAGTAAAAACAAGAAGTTCAGTATGAATTTTTGCTCGTATCAACAAAGTATTTCATGCAGAAGATCCTGTTTTGAAATGTGACgaaacatttatattcatttgcTGATGATGATCAGACTGTAAATACAGGTGGTTAAATAAGCAGTGGCATGTTCATTCAAATTGCATGTGTCATTAAATTTATAATGTGACTTCCAGAAATAAACGAATAAGAAAGTATTGGAAAAACACA

Function

GO:

id name namespace
GO:0090307 mitotic spindle assembly biological_process
GO:0032147 activation of protein kinase activity biological_process
GO:0060236 regulation of mitotic spindle organization biological_process
GO:0072686 mitotic spindle cellular_component
GO:0005819 spindle cellular_component
GO:0005874 microtubule cellular_component
GO:0005880 nuclear microtubule cellular_component
GO:0008017 microtubule binding molecular_function
GO:0030295 protein kinase activator activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-080616-2 Predicted to enable myosin light chain kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in heart. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy 1. Orthologous to human MYLK2 (myosin light chain kinase 2).

Ensembl:

ensembl_id ENSDART00000048628

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043238 lncRNA upstream 6191 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00043241 lncRNA upstream 6191 32034741 ~ 32038219 (+) False XLOC_021802
TCONS_00043242 lncRNA upstream 6350 32037087 ~ 32038060 (+) False XLOC_021802
TCONS_00044851 lncRNA upstream 158497 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043214 lncRNA upstream 795465 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043249 lncRNA downstream 133523 32194408 ~ 32201494 (+) True XLOC_021805
TCONS_00044852 lncRNA downstream 149373 32210258 ~ 32213360 (+) True XLOC_021806
TCONS_00044853 lncRNA downstream 189471 32250356 ~ 32253077 (+) True XLOC_021807
TCONS_00044854 lncRNA downstream 331608 32392493 ~ 32418824 (+) False XLOC_021809
TCONS_00043252 lncRNA downstream 331635 32392520 ~ 32397844 (+) False XLOC_021809
TCONS_00043239 mRNA upstream 4620 32029304 ~ 32039790 (+) False XLOC_021802
TCONS_00043236 mRNA upstream 6189 32028597 ~ 32038221 (+) False XLOC_021802
TCONS_00043237 mRNA upstream 6189 32028607 ~ 32038221 (+) False XLOC_021802
TCONS_00043235 mRNA upstream 10578 32028574 ~ 32033832 (+) False XLOC_021802
TCONS_00043234 mRNA upstream 17212 32021803 ~ 32027198 (+) True XLOC_021801
TCONS_00043245 mRNA downstream 5283 32066168 ~ 32085939 (+) True XLOC_021803
TCONS_00043246 mRNA downstream 40317 32101202 ~ 32107459 (+) False XLOC_021804
TCONS_00043248 mRNA downstream 40476 32101361 ~ 32107608 (+) True XLOC_021804
TCONS_00043250 mRNA downstream 274986 32335871 ~ 32352179 (+) True XLOC_021808
TCONS_00043251 mRNA downstream 331576 32392461 ~ 32400994 (+) False XLOC_021809
TCONS_00043240 other upstream 6191 32032765 ~ 32038219 (+) False XLOC_021802
TCONS_00043229 other upstream 103536 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043223 other upstream 376867 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043220 other upstream 610747 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043219 other upstream 611062 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043247 other downstream 40326 32101211 ~ 32107481 (+) False XLOC_021804
TCONS_00043259 other downstream 346310 32407195 ~ 32409927 (+) True XLOC_021810
TCONS_00043260 other downstream 351649 32412534 ~ 32421750 (+) True XLOC_021809
TCONS_00043264 other downstream 1058125 33119010 ~ 33119124 (+) True XLOC_021816
TCONS_00043265 other downstream 1229388 33290273 ~ 33290361 (+) True XLOC_021817

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_13309045_13319725.mRNA True 2518 mRNA 0.47 15 CI01000001 13309045 ~ 13319879 (+)