RNA id: TCONS_00043252


Basic Information

Item Value
RNA id TCONS_00043252
length 762
lncRNA type retained_intron
GC content 0.47
exon number 5
gene id XLOC_021809
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32392461 ~ 32423348 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACCAAATACAGTTTTTAGCAAACGCAGAACGCACAATGAGTTTATTTGCGAATGCTAAACATCAGAGGAAAAACCACTAGAGTTCTAAAATGGCAGACTCGGTAATGATGGGGAGCGGATCTTTAAACTCCGGAAGCCGCTCGGGGAGCAGTAAGACCTGCACCAGTCCCACAGAGAACTATCAGCTGGCTCGGAGACGCACGCTGCAAGTGGTGGTCAGTGCTCTGCTGACCGAGTGTGGCTTTGATAGCGCTGAGAAAGCTGTTGTGGAGACACTCACTGAGATGATGCAGAGCTATATAACAGAAGTTGGACGTTGCGCAAAGGCAAACTGTGAGCACACAGCCAGAAGCACCCCTACTCTGTCTGATGTGGTCATTACTCTCGTCGAAATGGGTTTTAATGTGGATACTCTTCCAGTGTACGCCAAAAGATCTCAAAGAATGGTTATAACAGCACGTAGGTCTCTAttatatctaaatatttatatttttctgctGTAACTGTTCCTGTTTTAATTGGTAACACTTATGCATTTCACAGCTCCGATAACAAACGCTCCGGTGGTACCAAAATCTCTGACGGCTGGACAGAAACGCACTCACCCGGCACACATCCCCAGCCACTTCCCTGATTTCCCAGATCCTCATACATACATCAGAACACCAACCTTTCGAGAGCCTGTATCAGACTATCAGGTGGTGAGAGAAAAGGCAGCGTCTCAGAGAAGAGATGTTGAACGAGCTCTCACACGCTTCA

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0005669 transcription factor TFIID complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040426-1013 Predicted to enable protein heterodimerization activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within cell differentiation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF8 (TATA-box binding protein associated factor 8).

Ensembl:

ensembl_id ENSDART00000140461

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044853 lncRNA upstream 139443 32250356 ~ 32253077 (+) True XLOC_021807
TCONS_00044852 lncRNA upstream 179160 32210258 ~ 32213360 (+) True XLOC_021806
TCONS_00043249 lncRNA upstream 191026 32194408 ~ 32201494 (+) True XLOC_021805
TCONS_00043241 lncRNA upstream 354301 32034741 ~ 32038219 (+) False XLOC_021802
TCONS_00043257 lncRNA downstream 8512 32406356 ~ 32409927 (+) False XLOC_021810
TCONS_00044855 lncRNA downstream 82486 32480330 ~ 32487726 (+) True XLOC_021812
TCONS_00044677 lncRNA downstream 164766 32562610 ~ 32562814 (+) True XLOC_021814
TCONS_00044856 lncRNA downstream 179206 32577050 ~ 32579434 (+) True XLOC_021815
TCONS_00044857 lncRNA downstream 1057719 33455563 ~ 33459265 (+) True XLOC_021820
TCONS_00043250 mRNA upstream 40341 32335871 ~ 32352179 (+) True XLOC_021808
TCONS_00043248 mRNA upstream 284912 32101361 ~ 32107608 (+) True XLOC_021804
TCONS_00043246 mRNA upstream 285061 32101202 ~ 32107459 (+) False XLOC_021804
TCONS_00043245 mRNA upstream 306581 32066168 ~ 32085939 (+) True XLOC_021803
TCONS_00043244 mRNA upstream 331635 32044410 ~ 32060885 (+) True XLOC_021802
TCONS_00043256 mRNA downstream 8165 32406009 ~ 32409928 (+) False XLOC_021810
TCONS_00043258 mRNA downstream 8617 32406461 ~ 32409746 (+) False XLOC_021810
TCONS_00043261 mRNA downstream 29110 32426954 ~ 32430118 (+) False XLOC_021811
TCONS_00043262 mRNA downstream 29110 32426954 ~ 32434933 (+) True XLOC_021811
TCONS_00043263 mRNA downstream 102072 32499916 ~ 32532612 (+) True XLOC_021813
TCONS_00043247 other upstream 285039 32101211 ~ 32107481 (+) False XLOC_021804
TCONS_00043240 other upstream 354301 32032765 ~ 32038219 (+) False XLOC_021802
TCONS_00043229 other upstream 451646 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043223 other upstream 724977 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043220 other upstream 958857 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043259 other downstream 9351 32407195 ~ 32409927 (+) True XLOC_021810
TCONS_00043260 other downstream 14690 32412534 ~ 32421750 (+) True XLOC_021809
TCONS_00043264 other downstream 721166 33119010 ~ 33119124 (+) True XLOC_021816
TCONS_00043265 other downstream 892429 33290273 ~ 33290361 (+) True XLOC_021817
TCONS_00043266 other downstream 896789 33294633 ~ 33309585 (+) False XLOC_021818

Expression Profile

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