RNA id: TCONS_00044856


Basic Information

Item Value
RNA id TCONS_00044856
length 2385
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id XLOC_021815
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32577050 ~ 32579434 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGGCATTCTcagtgggttttcttttaaacaacaaatttagccttaaatgagcataaaaagttaggaaagccaTCGATATCCCTTACTTTCACATcctaatgttgacaggtatggaaaTGACTCTTTAACTTGTCCCACGTCTTAAGAAATAGACCACAATCCTTTAAATCtccattttttttatgaaatagcTGTCATTTTTGAGTCATACTATATCAATGAGTTCATTGATTCGGTAAACACACTGGTAAGATGCTTTTGTGTCCGTTATAGCATTTAAAAGCCTTCATTGCAATCGCTTGTCAAATATTGACCAAAATATCCTTCAAAAAAATTCTCCTTTTGTGCTCCATGGAAAAGAAATTCAAGACTTGGACATACCCATGAGTGAATAATCGATCATccggatgaactattcctttaacagaTTAATTCATTGTCTTTCATGCAGCTCTTCATTAATCTCCTGCACTGGATCctatttttgatgtgttttttataTATCTCCGATCACACTGTGCACATGACTAGTTGAGATCAAAGGCGAGCTTCAAAGCAGCAGGAGGAATCTGAAGCTAAAGGGGTCTGTCTGTCTCCATCTCATTCCTATGCTCCACCAACACCACCCGTCTGAGAGAGAGATCTGATCAGTCTCCAACAGTTCACAAAGACCGGGAGAAAAATGACACGTCGCTGATTTAATCAACGAGAAACAACAGATTAAATGTTCTAAGGCCACAGGGGGGGAAAAGAAACAACCATTTCGGCCATTTGAGTCGGTATCTTCACATCCGATACTGCATTTTTACTGTTGAGAAGTTAAATCCCGAAAACCTCCGTGAACCTTAGATGACTCTGACCTGAACGACCTTGTCTAGTTGGCTTCGGATGATCTTCAAAAAACCTGCCATCATGCATTATAAATGAAAGCCGTGTTGTCTTTTGTTCATGCGTTCTGTTGACATATTTCATGTCAGGCGGGGggataataatacaaaaaaaaaaaatcccactcAAGCTATCAAGATCTAAAGTATTTTACAAATACTTTATATTTACAAACTCCGTTCTAAAGGTCTTTTCGTACCTGAATTTGAAAGTTGAGTGAGTGAACTTCTAAACCGGAGATTCTTTTGTTATTGTACAGTATACAGGGTCCGTTCCCTTAATAAAGCATCAACCGACAAGTGCGTAAGTAAGTGATCTTTTGGCACTTAATCCCGACGGATGTGTACAGAAAGGAAGTGACATGGTATATTACATCATCATAGGCGTTCCTCTGAGTCATCCACAACTCACATGACCTCTTGGCACTTGAACAACAGGAGTAAATGGGAAaggagatattattattattctttttttctataTGAGGTACTGTATAATGCATGCAGACTACACACACATTGGACCATacataataattaatactttCCGGTAAGATGATCTCAAGCGAGTCTCGTTTGACAGGGTTTTTCCTCCATGTTTGAGCTGAAGGTGCAACTCGTCGCCGCTTTCCTTACTAAATCTCAGCAGCGCTACTATGGAGGGAGGTTCAGTTCTGTAGGACGTCGTGCCGCGGAGATCAGCTCAACTGACCCCCGTTTGTTTTTTAGAAAAGCAACAAAAAATGCGAAGACAAAATAGAGTAACGTTTGTACATTCACATACGCTTACATGTAGAAAACAGGACATATGCACATAGAGAGCCGAGTTGGTCCAGTTCCAAACTGGTCTGTGGTCCTTCGCTGTCGTTTCAAGATAGTTTGGGACATGCTGGTTAAACTTTGGGCCCCATTTTGCGTTCATCACCTAAGATGCTTTGCTGTCTCTCAGGTTGGAGGGATTACTAGAGTGTGGACATGCACACGCGCGTGTGGGTAGCTTTCCAAGGACAAGAAGCCACTCGAGCTTTCGCCACACCAAAGATGAGGAGTTACGCTAGCCGACTCAACAGAAAGAActcatgtataaaaataaaatttggaAGTAAAAGCCATCAACTGGACGGTAATGGCGAGGCAGTAGATGTCTGTTTCCTTCTGTCGAATCCTCCTGAAATGGTTTTAGCAAGCACATTTTTGTTGAGGAAGTATCGGGGTCTCGTCAGATCCTGAAATCGAGTCTTGCATCCATCACGCTAATCAGATAgatgaactaaaaacaaaacaaaatgcctCAGGAAGCTGCTCGTCCCGcaatgtttatcttttttttccccttaaaaagaaacaactaaaaaactGAAGTTTCCAGTCTTGATCCCATCATTAAGACGAAAGCCATGTGAAGACTTGCTTTCATCAAATAGTGACCGCTTCACAGAATCGAAAAAAAGCACAAGCTATTGTTGGTGTGGTGTCTCTAGCAAGTGTTGCTCTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044677 lncRNA upstream 14236 32562610 ~ 32562814 (+) True XLOC_021814
TCONS_00044855 lncRNA upstream 89324 32480330 ~ 32487726 (+) True XLOC_021812
TCONS_00044854 lncRNA upstream 158226 32392493 ~ 32418824 (+) False XLOC_021809
TCONS_00043257 lncRNA upstream 167123 32406356 ~ 32409927 (+) False XLOC_021810
TCONS_00043252 lncRNA upstream 179206 32392520 ~ 32397844 (+) False XLOC_021809
TCONS_00044857 lncRNA downstream 876129 33455563 ~ 33459265 (+) True XLOC_021820
TCONS_00043283 lncRNA downstream 1399277 33978711 ~ 33983432 (+) True XLOC_021831
TCONS_00043285 lncRNA downstream 1408021 33987455 ~ 33991280 (+) False XLOC_021832
TCONS_00043291 lncRNA downstream 1459960 34039394 ~ 34043302 (+) True XLOC_021834
TCONS_00044859 lncRNA downstream 1467982 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00043263 mRNA upstream 44438 32499916 ~ 32532612 (+) True XLOC_021813
TCONS_00043262 mRNA upstream 142117 32426954 ~ 32434933 (+) True XLOC_021811
TCONS_00043261 mRNA upstream 146932 32426954 ~ 32430118 (+) False XLOC_021811
TCONS_00043256 mRNA upstream 167122 32406009 ~ 32409928 (+) False XLOC_021810
TCONS_00043267 mRNA downstream 717154 33296588 ~ 33309622 (+) True XLOC_021818
TCONS_00043269 mRNA downstream 804149 33383583 ~ 33444055 (+) False XLOC_021819
TCONS_00043270 mRNA downstream 834370 33413804 ~ 33444055 (+) True XLOC_021819
TCONS_00043272 mRNA downstream 1139168 33718602 ~ 33729552 (+) True XLOC_021822
TCONS_00043273 mRNA downstream 1172841 33752275 ~ 33757742 (+) True XLOC_021823
TCONS_00043260 other upstream 155300 32412534 ~ 32421750 (+) True XLOC_021809
TCONS_00043259 other upstream 167123 32407195 ~ 32409927 (+) True XLOC_021810
TCONS_00043247 other upstream 469569 32101211 ~ 32107481 (+) False XLOC_021804
TCONS_00043240 other upstream 538831 32032765 ~ 32038219 (+) False XLOC_021802
TCONS_00043229 other upstream 636176 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043264 other downstream 539576 33119010 ~ 33119124 (+) True XLOC_021816
TCONS_00043265 other downstream 710839 33290273 ~ 33290361 (+) True XLOC_021817
TCONS_00043266 other downstream 715199 33294633 ~ 33309585 (+) False XLOC_021818
TCONS_00043268 other downstream 801720 33381154 ~ 33420840 (+) False XLOC_021819
TCONS_00043271 other downstream 958617 33538051 ~ 33538169 (+) True XLOC_021821

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU17355 True 5382 lncRNA 0.40 2 CI01000001 4270132 ~ 4317068 (-)
tiger barb (Puntius tetrazona) TU234715 True 4039 lncRNA 0.39 2 NC_056721.1 16832106 ~ 16836166 (+)