RNA id: TCONS_00044857


Basic Information

Item Value
RNA id TCONS_00044857
length 1104
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id XLOC_021820
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33455563 ~ 33459265 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACATTTGAGGCAGACCTTCACTTTGCAGAGTAATGAGGTCATTAATGCTCAATCGCATGGTCTCGAATGCACACACATATACCTAGACTGAccaagcaaaacatttttaatggcaGCCAATCAGTCAGAGCAGATCTTTGACCCTGTAGGACCTGACCCGTGCTTCTATGCTGAAATCTCACCAGATTGGTCAGTTGCGAGAGCTCTCCCTTGTGCGTGTCCCGCTTCTCAATGTGGTGTTCGTGCCCTGAATCTCGTACAGGAGGCTGCTCTGTTGAAGACTGCTGCAGCtgaagagagagaaacagagaaggGAACATTAAGTGGAAATTCACCACACACTTCTGGACACTGTGGACTCTGACATCACGGTTCAGTCTGTACTGACGCCCTCTGACTCAACGCTAACACTGAGCTGGGAGGGACACGTTGAGCTGGACGCAAGGGGCATTTTGCAACAGATGTCAGATTTTACTCAACTTCTCCATTGTGCAGAGCCATGCACTCCTCCAAACCAAGAAGTACGCCCTAAATGGCATGAGAAACTGAACAAACAGCTAATTCAGGGAAGAATTCAGCACAGTCCCAGATGCAACAGCAGTTTTGCGTTACCAATCCGCTAGACTTGGTCAGGACGTCCTCAAAATGGGCCGAAAGGGGTTTATCCAGGCTTCTAAAATGTCTTATAGCTGATTCCTGAAATCACATACTGCTTGAGagggtactacatttgaatttgatttaCCTTCATGACCAGTAGAAAAGCACATTTTATATCAGGGGTTATCAAACGtttcagcccgcaacccccaaaataacaatgccagtgacttgcgtaCCGCACTaccctctgaggtggttataaatatataaaccttgcacacaatGGCATACATAAACCAATAGGCTCAAGtctattcattatttaatttcggAGATCATCCTCTATGTTCAGCTGTGTCCTGTATTTACttttaatgtatgtgtgtgccataaaggtgtcagaaagtttaacctggtgccataaaatttTTGTCTTTAATCATTGTCTTCAATACAATGTAATCACCCCTGGGGGTGCaaaaaattgaaaggctgatgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044856 lncRNA upstream 876129 32577050 ~ 32579434 (+) True XLOC_021815
TCONS_00044677 lncRNA upstream 892749 32562610 ~ 32562814 (+) True XLOC_021814
TCONS_00044855 lncRNA upstream 967837 32480330 ~ 32487726 (+) True XLOC_021812
TCONS_00044854 lncRNA upstream 1036739 32392493 ~ 32418824 (+) False XLOC_021809
TCONS_00043283 lncRNA downstream 519446 33978711 ~ 33983432 (+) True XLOC_021831
TCONS_00043285 lncRNA downstream 528190 33987455 ~ 33991280 (+) False XLOC_021832
TCONS_00043291 lncRNA downstream 580129 34039394 ~ 34043302 (+) True XLOC_021834
TCONS_00044859 lncRNA downstream 588151 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00044858 lncRNA downstream 588151 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00043269 mRNA upstream 11508 33383583 ~ 33444055 (+) False XLOC_021819
TCONS_00043270 mRNA upstream 11508 33413804 ~ 33444055 (+) True XLOC_021819
TCONS_00043267 mRNA upstream 145941 33296588 ~ 33309622 (+) True XLOC_021818
TCONS_00043263 mRNA upstream 922951 32499916 ~ 32532612 (+) True XLOC_021813
TCONS_00043262 mRNA upstream 1020630 32426954 ~ 32434933 (+) True XLOC_021811
TCONS_00043272 mRNA downstream 259337 33718602 ~ 33729552 (+) True XLOC_021822
TCONS_00043273 mRNA downstream 293010 33752275 ~ 33757742 (+) True XLOC_021823
TCONS_00043275 mRNA downstream 318254 33777519 ~ 33901337 (+) True XLOC_021825
TCONS_00043277 mRNA downstream 448634 33907899 ~ 33928316 (+) True XLOC_021827
TCONS_00043278 mRNA downstream 474963 33934228 ~ 33951831 (+) False XLOC_021828
TCONS_00043268 other upstream 34723 33381154 ~ 33420840 (+) False XLOC_021819
TCONS_00043266 other upstream 145978 33294633 ~ 33309585 (+) False XLOC_021818
TCONS_00043265 other upstream 165202 33290273 ~ 33290361 (+) True XLOC_021817
TCONS_00043264 other upstream 336439 33119010 ~ 33119124 (+) True XLOC_021816
TCONS_00043260 other upstream 1033813 32412534 ~ 32421750 (+) True XLOC_021809
TCONS_00043271 other downstream 78786 33538051 ~ 33538169 (+) True XLOC_021821
TCONS_00043274 other downstream 300482 33759747 ~ 33760665 (+) True XLOC_021824
TCONS_00043276 other downstream 369400 33828665 ~ 33830190 (+) True XLOC_021826
TCONS_00043288 other downstream 543492 34002757 ~ 34002873 (+) True XLOC_021833
TCONS_00043293 other downstream 588151 34047416 ~ 34053709 (+) False XLOC_021835

Expression Profile

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